Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0181 ATGAAGAGATCACTTGGCAGCTCGGATTCTTTGGGTGCTTTGATCACCGTGTGTCCACCCACAGAGGAACACAGTCCGAGGAACAACAACCATGTGTATGGGAGGGAGTTCCAATCCATGATGCTGGATGGGCTAGACGAGGAAGGGTGTGTGGAAGAATCAACCCACCTGATGGGCGAGAAGAAACGGCGTCTGAGTGTGGATCAAGTCAAGGCTTTGGAGAAGAACTTCGAGGTAGAAAATAAGCTTGAGCCTGAGAGGAAGGTGAGGCTTGCTCAAGAACTTGGGTTGCAGCCTAGACAAGTGGCGGTCTGGTTCCAAAACCGTCGTGCTAGATGGAAAACGAAGCAATTGGAGAGAGATTACGGTGTTCTCAAAGCCAATTATGAAGCCCTCAAGCTTAACTATGACGCCCTCCAACAGGACAACGAAGCATTGTTCAAAGAGATTAAGGAATTGAAATCAAGACTGCAAGAAGAGCACACTGAAAGCGATATTTCAGTGAAGGAAGAGATTACGGGGCCTGATTCCGACGACAAGATGATGGAGCGGAGTAACCCACCACCTCCCCAAACCTCCATTCCTGAATCAGAGTGCAAGGACTTGAATTATGAGTGCTTCAATGGGGTTGGAGCTGCCTCACTCATACCAGCAGATTTCAAAGACGGCGCTTCAGATAGCGACTCTAGCGCAATCTTGAACGAAGATAACAGCCCCAACGCCGCCATTTCCTCGTCGGGGGTTCTTCAAAGTCACCACCTGTTGATGTCTCCAGGGTCGTCTTCCCTCCAATTCAATTGTTCCTCGTCCTCATCGCCATCGTCCATGAACTGCTTTCAATTCCAGAAAACATACCAGAGTCCGTTTGTGAAGATGGAAGAGCACAACTTCTTCAGCGCAGAAGAAGCCTGCAATTTCTTTTCGGAAGAGCAAGCACCCACCCTCCAGTGGTACGGTTCTGACCACTGGAGTTAA 975 0.4923 MKRSLGSSDSLGALITVCPPTEEHSPRNNNHVYGREFQSMMLDGLDEEGCVEESTHLMGEKKRRLSVDQVKALEKNFEVENKLEPERKVRLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYEALKLNYDALQQDNEALFKEIKELKSRLQEEHTESDISVKEEITGPDSDDKMMERSNPPPPQTSIPESECKDLNYECFNGVGAASLIPADFKDGASDSDSSAILNEDNSPNAAISSSGVLQSHHLLMSPGSSSLQFNCSSSSSPSSMNCFQFQKTYQSPFVKMEEHNFFSAEEACNFFSEEQAPTLQWYGSDHWS 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0181 324 ProSiteProfiles 'Homeobox' domain profile. 56 116 IPR001356 GO:0003677
Dere03g0181 324 Gene3D - 59 123 - -
Dere03g0181 324 MobiDBLite consensus disorder prediction 158 197 - -
Dere03g0181 324 Pfam Homeobox associated leucine zipper 116 158 IPR003106 GO:0006355|GO:0043565
Dere03g0181 324 Pfam Homeodomain 61 114 IPR001356 GO:0003677
Dere03g0181 324 PRINTS Lambda-repressor HTH signature 87 96 IPR000047 GO:0003677
Dere03g0181 324 PRINTS Lambda-repressor HTH signature 96 112 IPR000047 GO:0003677
Dere03g0181 324 FunFam Homeobox-leucine zipper protein HAT5 54 118 - -
Dere03g0181 324 MobiDBLite consensus disorder prediction 158 183 - -
Dere03g0181 324 SUPERFAMILY Homeodomain-like 56 118 IPR009057 -
Dere03g0181 324 SMART HOX_1 59 120 IPR001356 GO:0003677
Dere03g0181 324 ProSitePatterns 'Homeobox' domain signature. 91 114 IPR017970 GO:0000981|GO:0006355
Dere03g0181 324 CDD homeodomain 61 117 IPR001356 GO:0003677
Dere03g0181 324 Coils Coil 115 163 - -
Dere03g0181 324 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 49 292 IPR045224 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0181 Dere-ChrDere03 5354033 5355474 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0181 1 324 Homeobox Transcription Factor Family AT2G22430 46.459 7.22e-78 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Dere03g0181 Homeodomain 4.2e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g0181 03 5354033 5355474 Dere03g0181 03 5354033 5355474 CCT
Dere03g0181 03 5354033 5355474 Dere03g0181 03 5354033 5355474 ECH