Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0179 ATGAAGAAAGCCTATCATCCTGTTCACCCCACCGGTTTTTATCGGAAACCAGGATTCCACCGTGACGCTTCCTATCCCTCCAATTTCCGCACCGTCAACAATCACCGGCAATCGGAATTCTGCTCCAATCAACGGCTCGACCGTCCACCGGGTCGGTTTTGCCAAGTCCGCCAACCAAATTTCGTCGTTCAGCTCCGGTGCGGCCGCCGGAGTTTCGAGAGGGCAGATGTCAGGTCCTTGATCGCAGAATTCGAGTCTAAGGCTGAGACTTCCAGCGTTTTCCCCAGTGATCATATTGCTGCTACCCTAAATTTTTGTCAGTGGGTCGATGCGCTCGAGGCCTTTGTTTACTTTTGGGAATTTCGCCTCAATGAAGTTCATGACTTTACTCCGGAGCTCATATCGCACGTTCTCGTACCTTCCGACATGGACGAGCTACGTGGCCGGCTTCGGGGCCTTTTCGCGAGTCATGTGAAAGGCTTAATGGAAGGCAAAGAAGTGAAGAGATGGCGAGTGGAAAGTGAGCGTGTCTCGAAGGAAATTGCGCGTTTAATGCATTTGCTTAAGAGGCCAAAGTATTTCGGCGTTTGTAAGGAGCTCCGAGAAAAGAAGAATGGGCTTGATGCAGAGAAAGAGTTGATTGAAAGGAGAATAATGGAGTTTCAGTCCGCAATGGAGTTTATATTCCGTTATCTCGAGGACGATAAGGTGGAGGAGGCTGCTTGGTCTGTTTTCCGAAAACGTAAGTTTGATGAAGCCTTGGATTGGAAACGGATGCATAGGCTGATAATGCGGGAGCGTCGCAGACTTGAGGAGGGATTACCCATTTATGCATACAGGAGTGATATTCTTCAGGAAATTCATTCTCAACAGATAATGGTCTTAATTGGAGAGACTGGTTCAGGGAAGAGTACGCAGTTGGTACAGTTTCTTGCTGATTCAGGTATTGGTGCTAATGAATCCATTATATGCACTCAGCCTCGTAAGATTGCTGCCAGGTCGTTGGCAAATAGGGTCCAGGAAGAAAGTAGTGGATGCTATGAAGATAATTTAATCAAGTGTTATTCAACATTCTCATCCGCGAATGAGTTTAATTCTGGAATAATTTTCATGACAGACAACTGTTTATTGCAGCACTACATGAGTGATGATAAGTTGTCTGGGATCTCATGCCTCATAATTGATGAGGCTCATGAAAGGAGCCTAAATACAGATCTTCTGCTGGCATTGATCAAGAGTTTGCTCTGTAGGAGAGATAAAATGCGGCTTATCATCATGTCTGCTACAGCTGATGCAAAGCAGTTATCTCATTATTTCTATGGTTGTGGGATATTCCATGTGTTAGGGAGAAACTTTCCAGTTGATGTGAGATATGTTCCTTCTGCTTATGCAGAACGCTCTGGTCCTGCCTGTGTTGCTTCATATGCTTCTGATGTGGTGAGAATGGCAACTGAAATTAACAAAACAGAGAAAGAGGGAACCATTCTTGCCTTTTTGACCTCACAGATGGAGGTTGAGTGGGCTTGTGAAGAGTTTAAAGCTCCGTCTGCTATTGCTTTGCCCTTACATGGCAAACTTGTGCCTGAAGAGCAATTTCGTGTTTTCCAGAACTACCCTGGGAAAAGAAAAGTGATATTTGCAACAAACCTTGCAGAGACATCACTTACCATTCCTGGTGTCAAGTATGTAATAGATTCTGGGTTCGTTAAAGATAGTCGATATGAACCTGGCAGTGGCATGAATGTACTTAGAGTTTGCTGGATCAGCCAGAGCTCCGCTAATCAACGGGCTGGTCGTGCTGGGAGGACTGAGCCTGGTAGGTGTTATAGACTATACTCGGAATCTGATTATAATTCTATGGAACCAAATCAAGAACCTGAAATTCGACGAGTACATCTTGGTGTAGCAGTTTTGAGGATACTTGCTTTGGGAGTGAAGAATGTGCGGGACTTTGATTTTGTTGATGCTCCAAGTCCTAGGTCTATTGAGATGGCAATCAGGAATCTAATTCAATTAGGAGCAATTAGATTGAACAATAATAATTATGAATTAACTGAAGAAGGTAGGTACTTGGTAAAGATGGGTGTTGAGCCTAGGCTTGGTAAACTTATTCTTGGCTGTTGCCATTATAATTTGGGTAAAGAAGGTCTTATTCTTGCTGCAGTGATGGCCAATGCCAGTAGCATATTTTGCAGAGTAGGAAACGAAAATGACAAACTTAGATCTGATTGTCTTAAGGTGCAATTTTGCCATAGCAATGGTGACCTGTTCACTCTCCTCTCTGTGTACAGGGAATGGGAAGCTTTGCCTCGAGAATGGAGAAACAAATGGTGTTGGGAAAACAGTATTAATGCCAAGTCCATGAGGAGATGCCAAGACACCATTATGGATTTGGAATCTTGCCTGGAGCACGAACTTAATGTTGTTATTCCTAGCTACTGGCGGTGGAACCCTTATAAGTCTTCTGATTGTGATAAGCATCTACAAAAGGTTATACTGTCCTCACTTGCTGAGAATGTAGCCATGTACTCTGGATGCCGTCAATTTGGTTATGAAGTGGCATTAACAGGACAGCTTGTTCAACTACATCCATCTTGCTCACTACTAGTTTTCGCTGAGAAACCTAGCTGGGTTGTTTTCGGTGAGCTCCTTTCAGTTTCCTGTCAATATTTGGTCTGTGTAAGTGCTTTGGACTTTGAATCATTGTACACCCTTGACCCTCCTCTGTTGTTTGATATATTCAAGATGGAAAAGAAGAAGTTGCAAATGAAGATGTTGACTGGTTTTGGCTGTACTCTGCTCAAGAGATTTTGTGGGAAAGGGAACTATAATCTGGTTAGTCTTGTGTCTCGCATAAGGACAGCTTGCATGGACGAACGTATCTCTGTTGAAGTTGATGTTGATGAGAATGACATTCGGTTATATGCCGCTTCGCATGACATGGAAGTGGCCCTTGGGTTAGTTAATGAAGTTGTGGAATGTGAGAGAAAATGGTTGCGTACTGAATGTTTGGAGAAATGTTTGTATCATGGGTCTGGTGTCTCTTCTCCAGTAGCTCTGTTTGGGTCTGGTGCTGAAATAAAGCATATGGAAATGGAAAAACGCAGCTTGAGTGTTGATGTATGTCATCCAAATATAAGTGCGTTTGATGATAAGGAGCTTTTGATGTTTATCCAGAAGAACTCCTCAGGTTGTATATGTGCTGTGCACAAGTTTACAAGCACAGTGCAGGATGTTGAAGATAGAGAAAAATGGGGCAGGATATCATTTCTATCCCCTGATGCTGCCAAAAGAGCTGCTGAGCTAGATGGAGAGGACTTTCATGGCTCCTCCTTGAAAATAGTTCCTTCACAAGCAACTAATGGAGGGGATAAAACATTTTCGTTTCCTGCTGTTAAAGCTAAAATAAGTTGGCCTCGTAGACCTAGCAAGGGATTTGGCATACTTAAATGTGAAATAAAGGATGTCAATTTTATCTTAAGAGATTTCTATAACCTTGCAATTGGAGGGAGGTATGTTCGATGTGAAGCTGGCAGAAGGGGGTTGGATAGTATTGTGGTAAGTGGGCTTGGTAAAGAACTCTCAGAAGCTGAAATCTTAGATGTACTAAGAACTGCTACGAGTAGGAGGATTTTGGATTTTTTCTTGGTGAGAGGAGATGCTGTTGGAAATCCCTTGTGCAGTGCTTGTGAAGAGGCACTCCTAAAAGAAATTTCTCCTTTTATGCCCAAAAGGTACCCCCACACTATTGCTTGCCGCGTTCAGGTGTTTCCGCCTGAGCCAAAGGATGCCTTCATGAGAGCTATGATCACTTTTGATGGGAGATTACATTTGGAGGCAGCAAAGGCTTTGGAGCAAATTGAAGGGAAAGCATTGCCTGGATGTCTTCCGTGGCAGAAGATAAAGTGCCAGCAGTTGTTTCATAGCTCCTTGACATTCCCTATTCCTGTGTATCGTGTGATTAAGGAACAACTGGATAAATTACTTGATAGTTTCAGCAGTATAAGGGGTCTTGAGTGGAACCTAGACAAGACTGCTAATGGTTCCCACCGAATTAAGATAACAGCCAATGCCACAAAGACGGTGGCAGAAGTAAGGAGGCCTCTCGAAGAACTCACAAGAGGGAAAACCATTGACCACAGGAGTCTCACCCCTACGGTATTACAGCTCTTATTGTCCAGAGATGGCTTAAGTCTTAAAAGCTCATTACAGCAAGAAACAGGAACATACATTCTTTTTGACAGGCACAACCTGAATTTACGGGTGTTTGGTTCCCCTGATAAAGTTGATTTGGTTCAGCAGAAGCTAATTCAGTCTTTACTCTCTCTCCATGAAAGCAAGCAGTTAAAAATCCACCTTCGAGGGAGAGATCTACCTCCTGATTTGATGAAGCAGGTGGTTAAGAATTTTGGGCCAGATCTCCATGGGCTAAAACTGAAGGTACCTGAGGCAGACTTCACTCTGAACACACGTCACCAGATAATCTTTTTTCATGGTAACAAGGAATTGAAATCCAAAGTAGAGGAATTAATTTATGAGATTGCTCGCTCAAGTAATCATTTGGCTCAGAGACCTGGGACTGGACTGGACTGCCCAATTTGCTTGTGTGAGGTTGAGGATGGTTATCAGCTTGAAGGCTGCGGTCATCTGTTCTGCCATTTGTGTCTGGTGGAGCAATGTGAATCTGTTATAAAAAACCAAGGTAATTTCCCGATATGTTGTGCTCATGCTGGCTGTGGGGATCCCATTCTACTTACTGATTTGAAAGCTCTTTTATCAAACGAGAAGTTAGAGGAACTTTTTAGGGCATCTTTGGGAGCTTTTGTAGCATCTAGCGAGGGCAAATTCAGGTTTTGCCCATCTCCCGACTGCCCATCCATTTATCGAGTGGCAAGTCCTGAGTCGGCTGGTGAGCCATTTGTTTGTGGTGCATGTTATGCAGAGACATGTACAAGGTGTCACTTAGAGTATCATCCGTACCTTTCATGTGAGAGATACAGGGAGTTCAAGGAGGATCCAGACTCATCTCTGAAGGAGTGGTGCAAGGATAAAGAACATGTTAAGAGCTGCCCTGCATGTGGGTATATGATTGAGAAAGTAGATGGGTGCAACCACGTTGAGTGTAAGTGTGGGAAGCACGTCTGCTGGGCTTGCTTGGAGTTCTTTGGAAGTAGTGATGATTGTTATAACCATTTGAGAAACACACACATGGCCATCATATAA 5223 0.4363 MKKAYHPVHPTGFYRKPGFHRDASYPSNFRTVNNHRQSEFCSNQRLDRPPGRFCQVRQPNFVVQLRCGRRSFERADVRSLIAEFESKAETSSVFPSDHIAATLNFCQWVDALEAFVYFWEFRLNEVHDFTPELISHVLVPSDMDELRGRLRGLFASHVKGLMEGKEVKRWRVESERVSKEIARLMHLLKRPKYFGVCKELREKKNGLDAEKELIERRIMEFQSAMEFIFRYLEDDKVEEAAWSVFRKRKFDEALDWKRMHRLIMRERRRLEEGLPIYAYRSDILQEIHSQQIMVLIGETGSGKSTQLVQFLADSGIGANESIICTQPRKIAARSLANRVQEESSGCYEDNLIKCYSTFSSANEFNSGIIFMTDNCLLQHYMSDDKLSGISCLIIDEAHERSLNTDLLLALIKSLLCRRDKMRLIIMSATADAKQLSHYFYGCGIFHVLGRNFPVDVRYVPSAYAERSGPACVASYASDVVRMATEINKTEKEGTILAFLTSQMEVEWACEEFKAPSAIALPLHGKLVPEEQFRVFQNYPGKRKVIFATNLAETSLTIPGVKYVIDSGFVKDSRYEPGSGMNVLRVCWISQSSANQRAGRAGRTEPGRCYRLYSESDYNSMEPNQEPEIRRVHLGVAVLRILALGVKNVRDFDFVDAPSPRSIEMAIRNLIQLGAIRLNNNNYELTEEGRYLVKMGVEPRLGKLILGCCHYNLGKEGLILAAVMANASSIFCRVGNENDKLRSDCLKVQFCHSNGDLFTLLSVYREWEALPREWRNKWCWENSINAKSMRRCQDTIMDLESCLEHELNVVIPSYWRWNPYKSSDCDKHLQKVILSSLAENVAMYSGCRQFGYEVALTGQLVQLHPSCSLLVFAEKPSWVVFGELLSVSCQYLVCVSALDFESLYTLDPPLLFDIFKMEKKKLQMKMLTGFGCTLLKRFCGKGNYNLVSLVSRIRTACMDERISVEVDVDENDIRLYAASHDMEVALGLVNEVVECERKWLRTECLEKCLYHGSGVSSPVALFGSGAEIKHMEMEKRSLSVDVCHPNISAFDDKELLMFIQKNSSGCICAVHKFTSTVQDVEDREKWGRISFLSPDAAKRAAELDGEDFHGSSLKIVPSQATNGGDKTFSFPAVKAKISWPRRPSKGFGILKCEIKDVNFILRDFYNLAIGGRYVRCEAGRRGLDSIVVSGLGKELSEAEILDVLRTATSRRILDFFLVRGDAVGNPLCSACEEALLKEISPFMPKRYPHTIACRVQVFPPEPKDAFMRAMITFDGRLHLEAAKALEQIEGKALPGCLPWQKIKCQQLFHSSLTFPIPVYRVIKEQLDKLLDSFSSIRGLEWNLDKTANGSHRIKITANATKTVAEVRRPLEELTRGKTIDHRSLTPTVLQLLLSRDGLSLKSSLQQETGTYILFDRHNLNLRVFGSPDKVDLVQQKLIQSLLSLHESKQLKIHLRGRDLPPDLMKQVVKNFGPDLHGLKLKVPEADFTLNTRHQIIFFHGNKELKSKVEELIYEIARSSNHLAQRPGTGLDCPICLCEVEDGYQLEGCGHLFCHLCLVEQCESVIKNQGNFPICCAHAGCGDPILLTDLKALLSNEKLEELFRASLGAFVASSEGKFRFCPSPDCPSIYRVASPESAGEPFVCGACYAETCTRCHLEYHPYLSCERYREFKEDPDSSLKEWCKDKEHVKSCPACGYMIEKVDGCNHVECKCGKHVCWACLEFFGSSDDCYNHLRNTHMAII 1740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0179 1740 SUPERFAMILY RING/U-box 1684 1732 - -
Dere03g0179 1740 CDD BRcat_RBR 1615 1666 - -
Dere03g0179 1740 Gene3D - 650 754 - -
Dere03g0179 1740 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 390 399 IPR002464 -
Dere03g0179 1740 FunFam RBR-type E3 ubiquitin transferase 647 753 - -
Dere03g0179 1740 SUPERFAMILY RING/U-box 1612 1668 - -
Dere03g0179 1740 CDD DEXHc_RHA-like 291 447 - -
Dere03g0179 1740 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1527 1607 IPR013083 -
Dere03g0179 1740 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 451 623 - -
Dere03g0179 1740 CDD Rcat_RBR_DEAH12-like 1687 1736 - -
Dere03g0179 1740 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 284 448 IPR014001 -
Dere03g0179 1740 Coils Coil 197 217 - -
Dere03g0179 1740 ProSitePatterns Zinc finger C2H2 type domain signature. 1715 1736 IPR013087 -
Dere03g0179 1740 CDD SF2_C_RHA 452 612 - -
Dere03g0179 1740 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 257 450 - -
Dere03g0179 1740 SUPERFAMILY RING/U-box 1529 1605 - -
Dere03g0179 1740 ProSiteProfiles TRIAD supradomain profile. 1527 1740 IPR044066 -
Dere03g0179 1740 SMART helicmild6 506 604 IPR001650 -
Dere03g0179 1740 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 828 903 IPR011709 -
Dere03g0179 1740 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 269 782 IPR027417 -
Dere03g0179 1740 PANTHER ATP-DEPENDENT RNA HELICASE 239 910 - -
Dere03g0179 1740 ProSitePatterns Zinc finger RING-type signature. 1547 1556 IPR017907 -
Dere03g0179 1740 ProSiteProfiles Zinc finger RING-type profile. 1531 1573 IPR001841 -
Dere03g0179 1740 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 1659 1737 - -
Dere03g0179 1740 SMART ha2_5 664 760 IPR007502 GO:0004386
Dere03g0179 1740 SMART ultradead3 272 457 IPR014001 -
Dere03g0179 1740 Pfam Helicase associated domain (HA2) 665 758 IPR007502 GO:0004386
Dere03g0179 1740 Gene3D - 451 623 IPR027417 -
Dere03g0179 1740 Pfam Helicase conserved C-terminal domain 486 603 IPR001650 -
Dere03g0179 1740 Gene3D - 231 450 IPR027417 -
Dere03g0179 1740 Pfam IBR domain, a half RING-finger domain 1607 1663 IPR002867 GO:0008270
Dere03g0179 1740 Gene3D - 1659 1738 - -
Dere03g0179 1740 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 478 644 IPR001650 -
Dere03g0179 1740 SMART ibrneu5 1664 1728 IPR002867 GO:0008270
Dere03g0179 1740 SMART ibrneu5 1598 1663 IPR002867 GO:0008270
Dere03g0179 1740 Pfam DEAD/DEAH box helicase 282 433 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0179 Dere-ChrDere03 5321674 5328378 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0179 1546 1722 C3H Transcription Factor Family AT2G31770 29.189 1.77e-13 73.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g0179 03 5321674 5328378 Dere03g0179 03 5321674 5328378 ECH