Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0178 ATGGCTTGGGGAAGAAAATGCGGCCCAACACCTTCCCCTCATCAGTCGCCGGTGTCGCTTCCGGCTCAAGTTGCGCTGCCAATAGTGTCCCACGATTACGATCATCACATACATCAGATCCATCTACTTCGAGGTGTTATGATCGCCATAGCTTCCACACTTGGCGTGATTCTCCTTCTTTTGGCCGTGTTAAAAATTGTGGGATACTACTGTTTTAGGAGACACTACGATGGGAGAAGAAACTCACCGATATTGTTCGATATCCATGGAGATACTCTGTTTTCCGATGATGAGGAAACAACAATTACCCATCCGATATGGCTCATCAACACCGTGGGTCTCCAGCAATCTGTTATAGATTCAATCACAGTCTGCAAATACAAAAAAGACGAGGGATTAGTTGAAGGAACAGAGTGCTCTGTATGCTTAGGTGAATTTCAGGAAGACGAGAGTCTTCGACTTTTGCCCAAGTGCAGCCACGCTTTTCACGTGCCTTGCATCGATACCTGGTTGAGATCGCGTAAGAATTGCCCCTTGTGTCGTGCCCCTATAGTTCGTGAAACTTCTGGAAGAGAAGCAAGCGTAGTGACTGTGTCTGATTCTATTGTTTCCAGTGAGATCCATGTAGGGAATTTGGACGATGAAGTAGGGAATTCTGACGTTGGAGAAGGCGAGAGTAGTCAATTAAGGCTTGGAGATGATGATTCTGGGATTATGCCCACTGAAGATAGAGAAGATGGTGAAGTTTCAGATATAAGTTTGGCTACTTCCGCCAAGACGAATTGCCGTAGTTCGCGGGTGAGCAGGTCAGCTTCAGTTCATTCTTCTACTTCTGCATATGAAGCACGGACGCAGAATTTAACGCACTCGTTTTGA 876 0.4612 MAWGRKCGPTPSPHQSPVSLPAQVALPIVSHDYDHHIHQIHLLRGVMIAIASTLGVILLLLAVLKIVGYYCFRRHYDGRRNSPILFDIHGDTLFSDDEETTITHPIWLINTVGLQQSVIDSITVCKYKKDEGLVEGTECSVCLGEFQEDESLRLLPKCSHAFHVPCIDTWLRSRKNCPLCRAPIVRETSGREASVVTVSDSIVSSEIHVGNLDDEVGNSDVGEGESSQLRLGDDDSGIMPTEDREDGEVSDISLATSAKTNCRSSRVSRSASVHSSTSAYEARTQNLTHSF 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0178 291 CDD RING-H2_EL5-like 138 181 - -
Dere03g0178 291 FunFam RING-H2 finger protein ATL54 114 187 - -
Dere03g0178 291 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 189 IPR013083 -
Dere03g0178 291 SMART ring_2 139 180 IPR001841 -
Dere03g0178 291 SUPERFAMILY RING/U-box 129 190 - -
Dere03g0178 291 SMART FANCL_C_2 135 188 - -
Dere03g0178 291 MobiDBLite consensus disorder prediction 236 250 - -
Dere03g0178 291 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 41 188 IPR044675 -
Dere03g0178 291 MobiDBLite consensus disorder prediction 213 250 - -
Dere03g0178 291 MobiDBLite consensus disorder prediction 265 291 - -
Dere03g0178 291 ProSiteProfiles Zinc finger RING-type profile. 139 181 IPR001841 -
Dere03g0178 291 Pfam Ring finger domain 138 181 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0178 Dere-ChrDere03 5318966 5319841 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0178 48 231 C3H Transcription Factor Family AT1G72220 40.488 3.07e-41 145