Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0172 ATGATGATGTTGAGTTTGAGTATGAGGAAAATAAAGTCTCAGGTTTTTACAAATAGCTCTGCTTGTAAACTAAAATTAGGGGATCTCAAAGGAGCATTGCTAGATACAGAATTTGCAATGCGAGTTGGAGACAAAAATGTCAAAGCTTTGTTCCGTCAAGGACAGGCATACATGGCACTTAATGACATTGATGCTGCAGTTGAAAGCTTTAAGAAGGCACTGATCTTGGAGCCAAATGACACTAGAATCAAACAAGGACTTGCTGCTGCTGCTTGTTCTACTTCATCTACCTATGTGCATATTGGCTGCATAAAGACACATGAATGGTCAAAAGTATTAGCATTGAGATTTTTGCTAGAAAGTACTGGTGACGACGGTGGTGTGTTGTGTTGTGCTCTTCTTGGGTACGATCATCGTGGTCTTCGTGGTCATCATCGTCATCTTCCGTTTCCACTTTCCAATTCACAAGAACTAGCAGTAAGAGACTCCAATCAGAAGAGTGTATGTTAA 510 0.4039 MMMLSLSMRKIKSQVFTNSSACKLKLGDLKGALLDTEFAMRVGDKNVKALFRQGQAYMALNDIDAAVESFKKALILEPNDTRIKQGLAAAACSTSSTYVHIGCIKTHEWSKVLALRFLLESTGDDGGVLCCALLGYDHRGLRGHHRHLPFPLSNSQELAVRDSNQKSVC 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0172 169 Pfam Tetratricopeptide repeat 47 80 IPR001440 GO:0005515
Dere03g0172 169 ProSiteProfiles TPR repeat profile. 47 80 IPR019734 GO:0005515
Dere03g0172 169 SMART tpr_5 47 80 IPR019734 GO:0005515
Dere03g0172 169 PANTHER ARYL HYDROCARBON RECEPTOR INTERACTING PROTEIN RELATED 12 88 IPR039663 -
Dere03g0172 169 Gene3D Tetratricopeptide repeat domain 4 96 IPR011990 GO:0005515
Dere03g0172 169 ProSiteProfiles TPR repeat region circular profile. 47 80 - -
Dere03g0172 169 SUPERFAMILY TPR-like 10 90 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0172 Dere-ChrDere03 5158174 5166838 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0172 18 84 Calmodulin-binding Proteins AT3G25230 46.269 9.67e-12 60.5