Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0169 ATGCCTTTTATCAATACATGGTTAAGATCGCATAAGAATTGCCCCTTGTGTTGTGCCCTTATAATTCGTGGAACTTCTGGAAGAGAAGCAAGCATAATGACTATGCCTGATTCAAACGTTTCCAATGACACCCATACAAAAAATTTGGAAGGTGAGGCTGGGAATTCTCACATTAGAGAAGGTCAAAGTAGTCAATTAAGGCTTGGAGAAGATTATTTTAGGATTATGCCTACTGATGACGGTGAAGATGGTGAAGTTTCAGATAAAAATTTGGCTACTTTTGACAAGATGAATTGCCATAGTTCGCGGGTTAGCAGGTCCCACAAGAAAATGGAATTTATGGTGAAAAGTCTTCGACTGTGGCCCAAGTGCAGTCACGCTTTTCACGTGTCTTGCATCGATACATGGTCGAGATCGCATAAGAATTGCCCCTTGTGTCGTGCCCCAATAGTTTGTGAAACCTCTGGAAGAGAAGCAAGCATAGTGACATTGCCTGATTCTAACGTTTCCAATGACACCCATACAGAGAATTTAGATGGTGAGGCAGGGAATTCTCATGTTGGAGAAGATGATTTTGGGATTATGCCTACTGAAGATGGTGAAGTTTCAAATAAAAATTTGGCTACTTCTGACAAGATCAATTGCCATAGTTCGCGGGTTAGCAGGTTAGCATCAGTGCATTCTTCTACTTCTACATAA 699 0.4106 MPFINTWLRSHKNCPLCCALIIRGTSGREASIMTMPDSNVSNDTHTKNLEGEAGNSHIREGQSSQLRLGEDYFRIMPTDDGEDGEVSDKNLATFDKMNCHSSRVSRSHKKMEFMVKSLRLWPKCSHAFHVSCIDTWSRSHKNCPLCRAPIVCETSGREASIVTLPDSNVSNDTHTENLDGEAGNSHVGEDDFGIMPTEDGEVSNKNLATSDKINCHSSRVSRLASVHSSTST 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0169 232 MobiDBLite consensus disorder prediction 35 61 - -
Dere03g0169 232 MobiDBLite consensus disorder prediction 164 180 - -
Dere03g0169 232 ProSiteProfiles Zinc finger RING-type profile. 124 147 IPR001841 -
Dere03g0169 232 PANTHER RING-H2 FINGER PROTEIN ATL16 117 193 IPR044600 GO:0016567|GO:0016740
Dere03g0169 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 156 IPR013083 -
Dere03g0169 232 SUPERFAMILY RING/U-box 116 155 - -
Dere03g0169 232 Pfam RING-H2 zinc finger domain 117 147 IPR024766 GO:0008270
Dere03g0169 232 MobiDBLite consensus disorder prediction 164 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0169 Dere-ChrDere03 5122372 5125131 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0169 116 204 C3H Transcription Factor Family AT5G10380 45.055 7.43e-17 76.3