Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0168 ATGCTCGTTCTTCTTCAACCCTCTCCCATTGACTTGTTCAGGGCCCTTGTGTCAACCCACAAAACTCCCACCCTTCCTTTCCTCCTCTTCTACTTCTTCTTTCAGCCCCAGCACATGCTTCCCCACTCTATTAGAGAAACCCTCGTCCAAAAATCTAATGCTCGTAAAGATCGATTCCCGTACTCGGTCTGGGGATTTTTCCGCCGCCTTGTCTCTGCTAAGAAAGCTGATGGGGGTTCTAGAACGGAGGAAGAAGAGAAAGTGTACTCCTGGTTATATACCTTGGCCCAATCTGAGAAGGACTTGGCATTTGAGTACGTTCGGTCCACCGAAAGAGGGTTGAGTTTCACTGAAGCAGAGAGAAGGCTGAGGGAAAATGGGCCAAATGTTCCACTTGAGCATACTTTTCCAAGCTGGTGGCATCTTCTATGGAACGCACTTTTCCATCCTTTCAATATCATTCTGATTGTCTTATCTGTTCTGTCCTTCATAACCAGTGACACTCCAAATGGTTGTATCATGCTCACACTGGTTTTTATCAGTGTCTCCCTCCGTTTCTATCAGGAGTTCAGCAGCTCAAAAGCAGCGATGAAGCTTTCAGAATTCGTAAGATGTCCAATAAAAGTTCAAAGATGTGCAGGTAGAATTGAGCAGACAGAATTAATAGTTCAAGTTGATCAGAGGGATATTGTTCCCGGAGACATTGTGATTTTTGAACCTGGGGACCTCTTTCCCGGAGACATCAGATTATTATCTTCCAAGCATCTTGTTGTAAGCCAGGCCTCACTAACTGGGGAATCATGGACAACAGAGAAAACTGCAGATATCAGAGAAACTCTCAGCACTCCTTTGTTAGATTTAACAAACATTTGCTTCATGGGCACAAACGTGGTATCAGGAAATGGAACAGGTCTAGTTATATCAACTGGATCTAATACATACATGAGCACCATGTTCTCAAAAATTGGGAAGAAGAAACCACCAGATGAATTTGAAAAGGGTCTGCGCTGGATATTTTACGTGCTTGTGGCTGTTATGCTAGTACTAGTGACCATCATAGTCGTAACAGATTACTCAACCTCTCTTAATTTGAGTTCATGCATTCTTTTTGGAATCTCTGTTGCATCTGCCCTCACTCCTCAGATGCTTCCCCTCATCATCAATACTTGCCTTGCAAAAGGAGCACTTGCCATGGCTCGAGACCGATGTATAGTCAAAACTTTAACAGCTATACGCCACATGGGATCAATGGATATCCTTTGTATTGACAAGACAGGTACACTCACAATGAACCGTGCAATTATGGTGAATCATCTTGACAGCCAAGGGTTACCACAAGAAAAAGTACTTCGCTTTGCCTTCCTCAATTCTTACTTCAAGACTGAACAGAAGTATCCTCTGGATGACGCAATTCTGGCATATGTATATTCAAATGGGTTCAGGTTTCAGCCATCAAAATGGAGGAAGATAGATGAGATTCCTTTTGATTTCATACGAAGAAGAGTATCTGTCATCGTAGAAACAGAATCTCAAACTGAAGGTAGACATTCCCAATTCTTTGGCAGGTACATGGTGACCAAAGGGGCACTGGAGGAAGTAATGAGAGTTTGTTCATTCATTGAGAATTTCAGTAGCCATGAAGTTTCCGGGTTCTCTCCAGATGATTATCAAAGAATTTTAACCTTGGCGGAAGGACTGAGCAACGAAGGATTAAGAACTATAGGAGTAGCCATGAAGAAGCTGGAAATGCAAACATGGGAAACAAGTTATGGAAGGAAGAGTAATGAAGAGAATGTTGAAACAGACATGGTGTTCCTTGGTTTCATAACATTCTATGACCCTCCCAAGGACTCGGCAGAGCAAGCACTATGGCGTTTGGCAGAGAAGGGAGTGAAAGCAAAAGTTTTGACAGGTGACTCTCTCTCCTTAACCATGAGGGTATGCAGGGAAGTTGGCATCAGAACCACCCATGTAATCACAGGGCCTGAGTTAGATGAACTAGACCAAGAAAATTTCCATGAAACTGTTAAAAGAGCCACAGTTCTAGCTAGGCTCACCCCAATTCAGAAACTGCGTGTGGTCCAATCTTTACAAACAAATGGAAACCACGTTGTTGGGTTCTTGGGAGATGGTATTAATGATTCACTAGCTCTTGATGCTGCCAACGTAAGCATTTCAGTGGACTCAGGAGTAGCAATTGCCAAAGACATGGCAGACATCATATTACTTGAGAAAGATCTAAATGTTCTTGTGGATGGAGTGGAACATGGTAGACTCACTTTTGGGAACACGATGAAGTACATTAAACTGTCAGTCATTGCTAACTTAGGATCTGTGCTTTCGCTGCTCATAGCAACCTTGACACTTAAATATGAGCCTTTGACTTCAAGGCAGCTTCTTACTCAGAATTTTCTTTATAGCGTGGGACAGATTGCTATTCCATGGGACAAAACGGAAGAAGAGTATGTGAAAACTCCGAAGAAATGGTCAGAGAGAGGATTGCCTATGTTCATATTGTGGAATGGTCCTGTGTGCACTCTGTGTGATGTTACAGCTCTTTTGTTTCTTTGGTTCTATTACAAGGCTAATGGAAAGGTAGATCAAAAGTTTTTCCATTCCGCTTGGTTCGTTGAGGGGCTGCTAATGCAGACTTTGATGTTCCACCTGATACGCACAGAAAAAATTCCCTTTATTCAGGACATTGCCTCATGGCCTGTGATTTGTTCTACTGCTGTGATTTCTGCTATTGGAATTATAATTCCATTCACGCCCATAGGAAAGGTCATGGGATTTGTGATTCTTCCGCTCTCGTATTTCGGGTTTTTGGTTGTTCTTTTTGTGGTCTATTTTATAGTTGGCCAGGTGGTCAAGAGACTTTATATATTGGTTTATAAAAGATGGCTTTGA 2907 0.4248 MLVLLQPSPIDLFRALVSTHKTPTLPFLLFYFFFQPQHMLPHSIRETLVQKSNARKDRFPYSVWGFFRRLVSAKKADGGSRTEEEEKVYSWLYTLAQSEKDLAFEYVRSTERGLSFTEAERRLRENGPNVPLEHTFPSWWHLLWNALFHPFNIILIVLSVLSFITSDTPNGCIMLTLVFISVSLRFYQEFSSSKAAMKLSEFVRCPIKVQRCAGRIEQTELIVQVDQRDIVPGDIVIFEPGDLFPGDIRLLSSKHLVVSQASLTGESWTTEKTADIRETLSTPLLDLTNICFMGTNVVSGNGTGLVISTGSNTYMSTMFSKIGKKKPPDEFEKGLRWIFYVLVAVMLVLVTIIVVTDYSTSLNLSSCILFGISVASALTPQMLPLIINTCLAKGALAMARDRCIVKTLTAIRHMGSMDILCIDKTGTLTMNRAIMVNHLDSQGLPQEKVLRFAFLNSYFKTEQKYPLDDAILAYVYSNGFRFQPSKWRKIDEIPFDFIRRRVSVIVETESQTEGRHSQFFGRYMVTKGALEEVMRVCSFIENFSSHEVSGFSPDDYQRILTLAEGLSNEGLRTIGVAMKKLEMQTWETSYGRKSNEENVETDMVFLGFITFYDPPKDSAEQALWRLAEKGVKAKVLTGDSLSLTMRVCREVGIRTTHVITGPELDELDQENFHETVKRATVLARLTPIQKLRVVQSLQTNGNHVVGFLGDGINDSLALDAANVSISVDSGVAIAKDMADIILLEKDLNVLVDGVEHGRLTFGNTMKYIKLSVIANLGSVLSLLIATLTLKYEPLTSRQLLTQNFLYSVGQIAIPWDKTEEEYVKTPKKWSERGLPMFILWNGPVCTLCDVTALLFLWFYYKANGKVDQKFFHSAWFVEGLLMQTLMFHLIRTEKIPFIQDIASWPVICSTAVISAIGIIIPFTPIGKVMGFVILPLSYFGFLVVLFVVYFIVGQVVKRLYILVYKRWL 968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0168 968 Gene3D - 170 920 - -
Dere03g0168 968 Gene3D - 433 612 IPR023299 GO:0000166
Dere03g0168 968 PANTHER CATION TRANSPORTING ATPASE 100 959 - -
Dere03g0168 968 NCBIfam HAD-IC family P-type ATPase 174 466 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Dere03g0168 968 NCBIfam HAD-IC family P-type ATPase 674 786 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Dere03g0168 968 Pfam haloacid dehalogenase-like hydrolase 417 722 - -
Dere03g0168 968 Pfam Cation transporter/ATPase, N-terminus 100 162 IPR004014 -
Dere03g0168 968 NCBIfam magnesium-translocating P-type ATPase 86 967 IPR006415 GO:0015444|GO:0015693|GO:0016020
Dere03g0168 968 SFLD Haloacid Dehalogenase 403 758 - -
Dere03g0168 968 ProSitePatterns E1-E2 ATPases phosphorylation site. 423 429 IPR018303 -
Dere03g0168 968 Gene3D - 205 309 - -
Dere03g0168 968 SMART Cation_ATPase_N_a_2 94 167 IPR004014 -
Dere03g0168 968 Pfam Cation transporting ATPase, C-terminus 792 959 IPR006068 -
Dere03g0168 968 PRINTS Magnesium-transporting ATPase signature 455 468 IPR006415 GO:0015444|GO:0015693|GO:0016020
Dere03g0168 968 PRINTS Magnesium-transporting ATPase signature 836 852 IPR006415 GO:0015444|GO:0015693|GO:0016020
Dere03g0168 968 PRINTS Magnesium-transporting ATPase signature 334 350 IPR006415 GO:0015444|GO:0015693|GO:0016020
Dere03g0168 968 PRINTS Magnesium-transporting ATPase signature 921 942 IPR006415 GO:0015444|GO:0015693|GO:0016020
Dere03g0168 968 PRINTS Magnesium-transporting ATPase signature 766 781 IPR006415 GO:0015444|GO:0015693|GO:0016020
Dere03g0168 968 PRINTS Magnesium-transporting ATPase signature 816 829 IPR006415 GO:0015444|GO:0015693|GO:0016020
Dere03g0168 968 PRINTS Magnesium-transporting ATPase signature 871 892 IPR006415 GO:0015444|GO:0015693|GO:0016020
Dere03g0168 968 Pfam E1-E2 ATPase 222 400 - -
Dere03g0168 968 SUPERFAMILY HAD-like 599 756 IPR036412 -
Dere03g0168 968 SFLD p-type atpase 403 758 IPR044492 -
Dere03g0168 968 SUPERFAMILY Calcium ATPase, transmembrane domain M 108 965 IPR023298 -
Dere03g0168 968 Gene3D - 418 745 IPR023214 -
Dere03g0168 968 SUPERFAMILY Calcium ATPase, transduction domain A 220 320 IPR008250 -
Dere03g0168 968 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 414 615 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0168 Dere-ChrDere03 5117507 5121807 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0168 90 834 Primary Pumps ATPases(2) AT1G07810 24.942 1.24e-56 211
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g0168 03 5117507 5121807 Dere03g0168 03 5117507 5121807 ECH