Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0166 ATGAGTCTCCACCGTTGCTCCCGTGCACAGGTGGGCACATCATCCACCCCTCTTTATGACTTAAGCATACGAGATAACTTCAAGGCCTCCTTCACTGTCCCGGTCGTCGGTTCTCTCTGTGGTTTCGCCCTCTTCGGCTTCGTCTCCCTCTTCCTCCTTCGTTGCGCCAATATGCACGTCCACACTCGGAATTCCAACGTCGTCAACAGCCGTGTCCGCCGCGAAGTTATTAACAAATGTCCCATCCTCATTTACTCCGCCGTGAAGGACCTCAGGATCGGGCAATCTGCTCTGGAATGTGCCGTGTGCTTGGCTGAGTTTCAAGACAACGACAATGTCCGCTTGCTGCCAAAATGCCTTCACCTTTTTCATCCCGATTGTATCGATGTTTGGTTCAAATCCCGCCTCACTTGTCCGGTTTGCCGCGTAGCACTCACTTTGTCGGATTTCTCCGACAATGAGGTCGCGTCACCGACGGCGTCAAATCCCGACGAATCACACCCTGCGGCGTCTGGTGAAATTGAGCCACAGAGCACCGCGGAATCGGGAGAACCACCAGAGCAAAGGATTCGCGTGGATGAAAGTGGAAGCACTGGTCCCCTGACGCAGACTACACCTCCGATCCAATCAAGGACGACGGACAGGTTTCCAAGGTCACACTCGACGGGTCACTCTCTGTTCATGGAACCCGAGGAGATGATGGAAAGCAGAATTCGTCGCTCGGCGAGCAGCGACGTCGTTATGTCGGGAGTATGGAGTTCGAAGAGAGGAAGTGATAACATGGAGAGGTGGGCGTTGTCTTACATGACCCCGCCATTTGTTTCAAGGGACTTAGGTGCTGTTAACTCTGTGAAGAACAATACTGAGAGCTCGTCGTATAGGCCTCCGGTTTGA 894 0.5347 MSLHRCSRAQVGTSSTPLYDLSIRDNFKASFTVPVVGSLCGFALFGFVSLFLLRCANMHVHTRNSNVVNSRVRREVINKCPILIYSAVKDLRIGQSALECAVCLAEFQDNDNVRLLPKCLHLFHPDCIDVWFKSRLTCPVCRVALTLSDFSDNEVASPTASNPDESHPAASGEIEPQSTAESGEPPEQRIRVDESGSTGPLTQTTPPIQSRTTDRFPRSHSTGHSLFMEPEEMMESRIRRSASSDVVMSGVWSSKRGSDNMERWALSYMTPPFVSRDLGAVNSVKNNTESSSYRPPV 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0166 297 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 25 261 - -
Dere03g0166 297 SMART ring_2 100 141 IPR001841 -
Dere03g0166 297 FunFam E3 ubiquitin-protein ligase ATL6 60 148 - -
Dere03g0166 297 MobiDBLite consensus disorder prediction 153 224 - -
Dere03g0166 297 SUPERFAMILY RING/U-box 99 147 - -
Dere03g0166 297 ProSiteProfiles Zinc finger RING-type profile. 100 142 IPR001841 -
Dere03g0166 297 CDD RING-H2_EL5-like 99 142 - -
Dere03g0166 297 MobiDBLite consensus disorder prediction 195 220 - -
Dere03g0166 297 MobiDBLite consensus disorder prediction 153 184 - -
Dere03g0166 297 Pfam Ring finger domain 99 142 IPR001841 -
Dere03g0166 297 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 57 147 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0166 Dere-ChrDere03 5090516 5091409 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0166 6 294 Rapid Response to Elicitors AT3G05200 31.138 1.14e-31 119