Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0163 ATGGAACCATTACTGTATGCATACGCCGCAAATCCGAAAACATCAAAGGCCTCAAAACTGAAAGGTGAGCATGCATGCCACCAGTCGCAACCCCTGTGGCCACCCCATACCTCCGCCGCCACGTGGCTCCCTCCTCCTCCTTACCCTTTCTCTCACCGTAAAAACCCCCTTCACCTTTTCCTGCCAAATCTACTTCATTTTCACTATCAACTTGATGATGTACTTTCACTCCCTTGCACGATAATATTCATGGGTCTGTCAAACATTCCTAATTTAGCCGAAGGGGTTCTTCCTGTGCTTGTGATGAACACGGTGCTGTCAGTGGTTCTGTTGAAGAACATGTTGAGATCTGTGCTGGAAGCAGTTGGCGTGACATCCTCCTCCTCCTCGTATTCTCAGAACATGGAGGAAGACACAGATGAACTATACCCAGATGGTTCGAGCTCGAGCTCGAGTTCTAGGAGAAGGAGGATCTCAATAACACAGTACAATTGTGCAGGCGTAACAAGTGAGACAAGTGTCGGTGGTGGCGGTGGAGTGAGTACGGTGGAGTGCTGCGTGTGTCTGTGTAGGTTCGAAGCGAACGAGGAGGTGAGTGAATTGGCCTGCAAGCACTTCTTCCACAGAGCTTGCTTAGACAGGTGGTTTGATAACAAACATAGCACCTGTCCTTTGTGTCGTTCCATAAACTAA 693 0.4892 MEPLLYAYAANPKTSKASKLKGEHACHQSQPLWPPHTSAATWLPPPPYPFSHRKNPLHLFLPNLLHFHYQLDDVLSLPCTIIFMGLSNIPNLAEGVLPVLVMNTVLSVVLLKNMLRSVLEAVGVTSSSSSYSQNMEEDTDELYPDGSSSSSSSRRRRISITQYNCAGVTSETSVGGGGGVSTVECCVCLCRFEANEEVSELACKHFFHRACLDRWFDNKHSTCPLCRSIN 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0163 230 SUPERFAMILY RING/U-box 184 228 - -
Dere03g0163 230 ProSiteProfiles Zinc finger RING-type profile. 185 227 IPR001841 -
Dere03g0163 230 SMART ring_2 185 226 IPR001841 -
Dere03g0163 230 SMART ringv_2 184 227 IPR011016 GO:0008270
Dere03g0163 230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 143 230 IPR013083 -
Dere03g0163 230 PANTHER - 84 228 IPR044249 -
Dere03g0163 230 MobiDBLite consensus disorder prediction 129 155 - -
Dere03g0163 230 Pfam Ring finger domain 184 227 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0163 Dere-ChrDere03 5062347 5063252 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0163 84 228 C3H Transcription Factor Family AT2G04240 33.562 6.43e-18 76.3