Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0149 ATGGGGAAAAAAGGTGGATTTCTGCGTTATGCAGATGGTGTGGACAAGTTGCTATTGCTGATTGGGACACTGGGTTGCGTTGGAGATGGCCTACAAACCTCTGTCACAATGCTCGTTCTTGGCAGTTTGATTGATGACTATGCAAATCACACATCTGAGTCTCAGAATGCTGCCTTCAACCATACGGTAGACAAGTATGCTCTCAGGCTGCTCTATGTTGCCATTGGGGTGGGCTTTTCTTCGTTTATTGAAGGAGTATGTTGGACAAGAACTGCAGAAAGACAAACATCTCGCATGAGAATTGCATATCTTAAGTCTGTCCTTAGGCAAGAAGTGGGTTTCTTCGACAACCAAGGTGACTCCACCACCTTCCAAGTTATTGCCACCATATCTTCTGATGCTCAAACCATCCAAGACACCTTGGCTGAAAAGGTACCCAGTTGTTTGGTTCACCTTTCAGCAGTTTTCTCAAGCTTCATAGTAGCTGCAGTCCTTTCATGGAGACTAGCAGTTTCTGCATTTCCATTTTCGCTAATGATGATCATGCCTGCAATCATATTTGGGAAGAACCTGAAAGAGTTGGGACATAAAATGAAGGAAGCTTACGGCGTTGCTGGTAGCATAGCAGAGCAAGCAATCTCATCAGTTCGCACAGTTTATTCATACGTAGGTGAGAAACAAACACTAGAGAGGTTTGCGTCTGCTCTTGAAACAAGCATGAAGCTTGGCATAAAGCTTGGTTTAACCAAAGGTGTGGTGATCGGAAGCATTGGGTTGATATATGCAACTTGGGCATTCCAAACTTGGGTTGGAAGTGTTTTGGTCTCTCAGAAAGGAGAAAAAGGTGGGAAAGTATTTGTCGCTGAAATTTGTATCATCTGGGGAGGACTGTCTCTGATGAGTGCACTCCCAAGTCTTGCTTCCATAGCAGAGGCAACAGCAGCAGCTACCCGAATTTATGAGATGATTGATCGAGTTCCAGCTATATACTCAGACAGAGAAAAAGGGAAGATTTTGAAGGATGTGAGAGGAGAAATTACATTTCAAGATGTTCACTTTAGCTACCCATCTAGGCCACATACCCCAATTCTCAAAGGCCTCAATCTGAAATTTCGAGCAGGCAAAACGGTAGGTCTTGTTGGAGGGAGTGGTTCTGGAAAATCTACTATCATCTCTCTGCTTGAAAGGTTTTATGATCCTGTAAAGGGGACTATAATGCTTGATGGGTATGATATAAAGAGACTCCATGTCAAGTGGCTAAGGTCCCAGATGGGACTGGTGAATCAAGAGCCAATTCTCTTTGCAACATCCATTAAAGACAACATCTTACTTGGCGACGAAGGAGCTTCAACGGAAGCTGTCGAAAGAGTAGCAAAGGCTGCCAATGCACACGATTTCATTGTTAAACTTGCTAATGGATATGAAACTCAGGTGGGGCAACTGGGAACCCAATTGTCCGGAGGGCAAAAGCAGAGGATTGCCATAGCAAGGGCTTTGATCAGGAACCCTAGAATCCTACTGCTTGATGAAGCCACTAGTGCTTTGGATTCACAGTCTGAAAAATTAGTACAAGAAGCCTTGGATTCGGCTTCCCGAGGAAGAACCACAATCATCGTAGCCCACCGCCTTTCGACAATTCGCAAGGCTGATTCAATAGTGGTTCTTCAGTCAGGAAGAGTCGTCGAATCTGGTTCCCACGATGAGCTAATCCAACTGAACAACAGACAAGGTGGGGCTTACACCAAAATGCTGCAATTGCAACAATCAACCATGCAAGACCAAGAAGAATCTACGTACCACGTAAACGCGAGTCCGCGGAATGTAGAAATTCTAAGAACTGCACACTCTAGTTGGCAAAGCAGCCCAGCTCTGCCATTTAGTCCTATATATTCTATCAGTATTGCAGAGTCTCCCCTTGTGCCCTCTTGGGGTGACGACGACTATTACAATAAGAAGAACCATGATAAATCTTCTGATACAGATTCAAGTTTCTCCCAATGGCGTTTAATTAAAATGAATGCACCTGAATGGAAGCATGCTCTGGTTGGGTGTTTAGGAGCCGTAGGATCTGGAATATGCCAGCCAATATACTCCTATTGCCTGGGAATAGTTGCGTCTGTTTACTTCATAAAAGACGAGTCTCGCATCAATTCCGAAGTCAGGTTGTACTCGATCATCTTTTGCACCCTAGCCGTTGTGAACATGATCTCGGGACTCATTCAGCATTATAATTTTGCTGTCATGGCAGAACACTTGCTGAAACGAGTGCGAGAAAACTTGCTGACCAGGGTTCTGACCTTTGAGATAGGATGGTTCGACCAACAAGAGAACACTAGTGCAGCAATTTGTGCACGGCTAGCAAATGAGGTCAACTTGGTTCGATCCCTTGTTGCAGAACGGATGTCATTGTTGGTTCAAGTTTTCTTCATGGCGTCTCTGGCTTTTGCACTTGGTTTAGTCGTTTCATGGAGGGTGGCTATTGTGATGATCGCCATGCAGCCTTTGATAATTGGTTGTTTCTATTCAAAAAGCGTTTTGATGAAAAGTATGTCAGGTAAGGCTCAAAAGGCTCAAAAAGAGGGTACTCAATTAGCAATGGAAGCTACCATCAATCACAGGACTATTACTGCATTCTCATCTGAGAAAAGGATATTAAATTTGTTTAAGATTGCTATGAATGGTCCTCACAAGGAAAGCATCAGGCAGTCATGGATTTCAGGTTCTATCATGTCAATCTCTCAGTTTTTGACAACTGCATCTATAACTCTTACTTTTTGGTATGGAGGGAGGCTGTTGAATCAAGGCTTGGTGGAATCCAAGAACCTTTTACAGGTTTTTCTTATCTTGATGGGCACTGGTAGACAAATTGCAGAGACGGGAAGCAGGACTTCTGATATAGCCAAAAGTGGAAGAGCCATTGGTTCAGTTTTTGCTATCCTAGACAGGAAAAGTCAGATTGAACCTGAAGATGATGCTACATATAGAAAGTCAAAAAAGACGATAAAGGGTAACATAAAGCTGAAGAACGTCTTTTTCTCTTACCCAGCAAGGCCTGACCAAATGATACTCAAGGGCCTTAGTCTTGAGATTGAAGCTGGAAAAACAATAGCATTAGTGGGACAGAGTGGCTCAGGAAAATCCACCATCATTGGGCTAATTGAAAGATTTTATGACCCCGTGAAGGGATCAGTATCCATAGATAACTGTGACATCAAGGAATTCAATTTGAGAAAGTTGAGATCACAGATCGCCTTGGTGAGTCAGGAGCCCACTCTCTTCGCAGGAACTATACGTGACAACATTGTTTATGGGAAGAAGGAAGCGTCAGAGGATGAGATAAGAAGGGCAGCTCGTCTTGCAAATGCTCATGAGTTTATCAGTTCTATGAAAGATGGATATGATACATATTGTGGAGAAAGAGGAGTACAGCTATCAGGAGGGCAAAAGCAGAGGATTGCAATAGCTCGAGCAATACTGAAGAACCCATCAATCCTGCTCTTAGATGAGGCAACCAGTGCTCTAGATAGTGTATCAGAGAGTCTAGTGCAGGAGGCACTGGAGAAGATGGTGATAGGAAGAACATGTGTAGTTATAGCTCACCGTTTGTCCACTATACAGAGTGTAGATTCCATAGCTGTGATTAAAAATGGGAAGGTAGAAGAACTAGGATCTCACTCAGAGTTATTGGCCAAAGGACAAAACGGGGCATACCACTCTATGATTAGGCTGCAGCATGGTCACTCCACCTGA 3750 0.4368 MGKKGGFLRYADGVDKLLLLIGTLGCVGDGLQTSVTMLVLGSLIDDYANHTSESQNAAFNHTVDKYALRLLYVAIGVGFSSFIEGVCWTRTAERQTSRMRIAYLKSVLRQEVGFFDNQGDSTTFQVIATISSDAQTIQDTLAEKVPSCLVHLSAVFSSFIVAAVLSWRLAVSAFPFSLMMIMPAIIFGKNLKELGHKMKEAYGVAGSIAEQAISSVRTVYSYVGEKQTLERFASALETSMKLGIKLGLTKGVVIGSIGLIYATWAFQTWVGSVLVSQKGEKGGKVFVAEICIIWGGLSLMSALPSLASIAEATAAATRIYEMIDRVPAIYSDREKGKILKDVRGEITFQDVHFSYPSRPHTPILKGLNLKFRAGKTVGLVGGSGSGKSTIISLLERFYDPVKGTIMLDGYDIKRLHVKWLRSQMGLVNQEPILFATSIKDNILLGDEGASTEAVERVAKAANAHDFIVKLANGYETQVGQLGTQLSGGQKQRIAIARALIRNPRILLLDEATSALDSQSEKLVQEALDSASRGRTTIIVAHRLSTIRKADSIVVLQSGRVVESGSHDELIQLNNRQGGAYTKMLQLQQSTMQDQEESTYHVNASPRNVEILRTAHSSWQSSPALPFSPIYSISIAESPLVPSWGDDDYYNKKNHDKSSDTDSSFSQWRLIKMNAPEWKHALVGCLGAVGSGICQPIYSYCLGIVASVYFIKDESRINSEVRLYSIIFCTLAVVNMISGLIQHYNFAVMAEHLLKRVRENLLTRVLTFEIGWFDQQENTSAAICARLANEVNLVRSLVAERMSLLVQVFFMASLAFALGLVVSWRVAIVMIAMQPLIIGCFYSKSVLMKSMSGKAQKAQKEGTQLAMEATINHRTITAFSSEKRILNLFKIAMNGPHKESIRQSWISGSIMSISQFLTTASITLTFWYGGRLLNQGLVESKNLLQVFLILMGTGRQIAETGSRTSDIAKSGRAIGSVFAILDRKSQIEPEDDATYRKSKKTIKGNIKLKNVFFSYPARPDQMILKGLSLEIEAGKTIALVGQSGSGKSTIIGLIERFYDPVKGSVSIDNCDIKEFNLRKLRSQIALVSQEPTLFAGTIRDNIVYGKKEASEDEIRRAARLANAHEFISSMKDGYDTYCGERGVQLSGGQKQRIAIARAILKNPSILLLDEATSALDSVSESLVQEALEKMVIGRTCVVIAHRLSTIQSVDSIAVIKNGKVEELGSHSELLAKGQNGAYHSMIRLQHGHST 1249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0149 1249 CDD ABC_MTABC3_MDL1_MDL2 346 587 - -
Dere03g0149 1249 Gene3D ABC transporter type 1, transmembrane domain 8 609 IPR036640 GO:0005524|GO:0016020
Dere03g0149 1249 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 337 587 IPR027417 -
Dere03g0149 1249 SUPERFAMILY ABC transporter transmembrane region 7 327 IPR036640 GO:0005524|GO:0016020
Dere03g0149 1249 PANTHER ABC TRANSPORTER B FAMILY 8 694 IPR039421 -
Dere03g0149 1249 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1000 1244 IPR027417 -
Dere03g0149 1249 Pfam ABC transporter transmembrane region 20 279 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere03g0149 1249 Pfam ABC transporter transmembrane region 682 949 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere03g0149 1249 CDD ABC_MTABC3_MDL1_MDL2 1005 1244 - -
Dere03g0149 1249 CDD ABC_6TM_Pgp_ABCB1_D1_like 19 306 - -
Dere03g0149 1249 ProSitePatterns ABC transporters family signature. 1144 1158 IPR017871 GO:0005524|GO:0016887
Dere03g0149 1249 Gene3D - 991 1248 IPR027417 -
Dere03g0149 1249 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1005 1241 IPR003439 GO:0005524
Dere03g0149 1249 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 346 582 IPR003439 GO:0005524
Dere03g0149 1249 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 681 968 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere03g0149 1249 Gene3D ABC transporter type 1, transmembrane domain 647 990 IPR036640 GO:0005524|GO:0016020
Dere03g0149 1249 SMART AAA_5 373 559 IPR003593 GO:0016887
Dere03g0149 1249 SMART AAA_5 1032 1218 IPR003593 GO:0016887
Dere03g0149 1249 Gene3D - 336 588 IPR027417 -
Dere03g0149 1249 ProSitePatterns ABC transporters family signature. 485 499 IPR017871 GO:0005524|GO:0016887
Dere03g0149 1249 SUPERFAMILY ABC transporter transmembrane region 668 988 IPR036640 GO:0005524|GO:0016020
Dere03g0149 1249 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 20 311 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere03g0149 1249 CDD ABC_6TM_Pgp_ABCB1_D2_like 670 986 - -
Dere03g0149 1249 Pfam ABC transporter 1023 1172 IPR003439 GO:0005524
Dere03g0149 1249 FunFam ABC transporter B family member 4 336 595 - -
Dere03g0149 1249 FunFam ABC transporter B family member 4 995 1248 - -
Dere03g0149 1249 Pfam ABC transporter 364 513 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0149 Dere-ChrDere03 4952429 4957219 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0149 20 590 Calmodulin-binding Proteins AT2G36910 35.590 1.58e-97 338