Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0147 ATGGCTGAAACCGGTATTGTCCGGTTTCCGGGAAGCTTAGACCCACAAGCGGAGGAGTTCACGCCCAGAAATCTTACGCTTTTCAGGCCAACCCAACTGTACTACCCTTACGCACCCACCGGAGGGCTTCAAGTTCAACCTCTTCCCTTTTGTGATGCTGCTGCTGCTGCTACTGCTACTGCAGCTGTTGGTGTTCCCTATCCGCAGTTCTGTTCCCCCGCGGCGTACGTTAGCCCACTGGCGGTGGTGGCGCCGCCGGCTGCGCCGGCTTCCACCTCGCCTACACGGTCGCTGCTGCTGAGCTCTGTACCGGCGGAGTTTGTGAGCGAGTCGACGTTGAGGAGGGAATTGGAGGTGTTTGGGGATGTGCGAGGCGTGCAGATGGAGAGGGTGCGAGAAGGAATGGTGACCGTTCATTTCTATGACTTGAGACATGCAGAGATGGCGTTGATGGCTGTTCGGAAGCAGCACATGCAACAGCAGACCAGGCTTCGCAATCACTACGCTTCCTTGTTGAAGTCACGCAATTCAGTGTTGGAGGCGGATTGTTATGCTTCTGCAGCCCCACTGCCACCGCCGGCGCGTGGGCTCGTAGCTGGGCGCGCCGTGTGGGCCCAGTACATTGTCCCGCCGTCTAACGTTGTTCCTGATGGCCAAAATCAAGGGACCATCGTGATTTTCAATTTGGATTCGGAGGTGTCCGCTGAGACTCTCCGACAAACTTTCGAGGCTTTTGGTCCAGTGAGGGAATTGAGAGATACGCCATCGAAAAAGAATCAAAGGTTTGTGGAGTTCTTTGACATCAGAGATGCAGCCAAGGCCTTGAAAGAAATGAATGGCAAACATATTATCGGTAAACCAGTTGTTATTGAATTCAGTCGTCCAGGAGGCCATGGCAGGAAGTTCTTCAATCCCGCTGCAATCTCCAAAAACACAATGCCTGTGAGTTCCCAGCCTCCTTCTCCTCCGCCATTGGCGCGCAAAAACGCACGTCGTTTTGCTCCCGTTGCTTCTCCTCGCTCTCATCTGCCTCAACCCCAATTTTCGTCCAAGAAATCAACTGTCAACAAGGGAAACAGTAACACTAATGTGGAGAGCGTTACAAAGAGTGTAAGTTCTGTTTCTCTGGAAACGGCAATGGGTTTGTCGAATTTGAGTGGGGTTGGAGAGAAGCAATCGGAAGGGCCTGCGACGAGAAATGCCATAAAAAACTACAGCAGCGAGACGACGGCGGGAAGCACAAAGCAGCAGCAACAAGCTAGAAGTAGGAATTGGAAGGGAAAGCAAGGAAAGAAGCAGGAAACTCGGTTTCTAATAAAAGAAGACGCCATTGTGGAGTCGAGTTGCAAAGATTCCAGGACTACTGTCATGATCAAGAACATACCCAACAAGTACAGTCAGAAGCTACTATTGAACATGCTGGACAACCACTGCATACACTGCAACGAGCAGATAGCCGACGGCGACGACCAGCCCTTGTCCTCTTACGACTTCGTTTATCTCCCCATTGATTTCAACAACAAGTGCAACGTGGGTTACGGGTTCGTGAATATGACATCTCCAGAGGCGACGCTAAGGCTGTACAAGGCATTCCATCTTCAACATTGGGAGGTATTTAACTCGAGAAAAATATGTGAAGTCACCTACGCAAGAGTCCAGGGTTTGGAAGCGCTGAAAGAGCACTTCAAGAACTCGAAGTTCCCATGCGAGATGGAGCATTACCTGCCAGTGGTGTTTTCACCGCCCCGAGACGGGAGGCAACTGACGGAGCCACTTCCAATCGTTGGGCAGAAGCAGCAAGGAGTGGCCATTGGTGTGGCGGACTCTAAAGCAAATGATGATGATGAGATGGAGGGTGAAGATAGGGTACAGCATGACATGCATAGCAGCAGTTGCAGCAGCAGCCAAAACGGCGGCGTCGAGGGTGATGATGACAGAAGAAGTGGAGGAGGAGAAGTAGGAAGAGATTAA 1971 0.517 MAETGIVRFPGSLDPQAEEFTPRNLTLFRPTQLYYPYAPTGGLQVQPLPFCDAAAAATATAAVGVPYPQFCSPAAYVSPLAVVAPPAAPASTSPTRSLLLSSVPAEFVSESTLRRELEVFGDVRGVQMERVREGMVTVHFYDLRHAEMALMAVRKQHMQQQTRLRNHYASLLKSRNSVLEADCYASAAPLPPPARGLVAGRAVWAQYIVPPSNVVPDGQNQGTIVIFNLDSEVSAETLRQTFEAFGPVRELRDTPSKKNQRFVEFFDIRDAAKALKEMNGKHIIGKPVVIEFSRPGGHGRKFFNPAAISKNTMPVSSQPPSPPPLARKNARRFAPVASPRSHLPQPQFSSKKSTVNKGNSNTNVESVTKSVSSVSLETAMGLSNLSGVGEKQSEGPATRNAIKNYSSETTAGSTKQQQQARSRNWKGKQGKKQETRFLIKEDAIVESSCKDSRTTVMIKNIPNKYSQKLLLNMLDNHCIHCNEQIADGDDQPLSSYDFVYLPIDFNNKCNVGYGFVNMTSPEATLRLYKAFHLQHWEVFNSRKICEVTYARVQGLEALKEHFKNSKFPCEMEHYLPVVFSPPRDGRQLTEPLPIVGQKQQGVAIGVADSKANDDDEMEGEDRVQHDMHSSSCSSSQNGGVEGDDDRRSGGGEVGRD 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0147 656 MobiDBLite consensus disorder prediction 640 656 - -
Dere03g0147 656 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 171 IPR000504 GO:0003723
Dere03g0147 656 Pfam RNA recognition motif 2 453 563 IPR007201 -
Dere03g0147 656 CDD RRM3_EAR1_like 453 554 IPR034458 -
Dere03g0147 656 Gene3D - 90 170 IPR012677 -
Dere03g0147 656 SUPERFAMILY RNA-binding domain, RBD 222 531 IPR035979 GO:0003676
Dere03g0147 656 MobiDBLite consensus disorder prediction 609 627 - -
Dere03g0147 656 MobiDBLite consensus disorder prediction 342 369 - -
Dere03g0147 656 FunFam Terminal EAR1-like 1 401 559 - -
Dere03g0147 656 MobiDBLite consensus disorder prediction 336 369 - -
Dere03g0147 656 MobiDBLite consensus disorder prediction 405 424 - -
Dere03g0147 656 Gene3D - 399 558 IPR012677 -
Dere03g0147 656 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 222 295 IPR000504 GO:0003723
Dere03g0147 656 SUPERFAMILY RNA-binding domain, RBD 87 157 IPR035979 GO:0003676
Dere03g0147 656 MobiDBLite consensus disorder prediction 607 656 - -
Dere03g0147 656 PANTHER RNA RECOGNITION MOTIF-CONTAINING 450 581 - -
Dere03g0147 656 SMART rrm1_1 97 165 IPR000504 GO:0003723
Dere03g0147 656 SMART rrm1_1 223 291 IPR000504 GO:0003723
Dere03g0147 656 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 224 287 IPR000504 GO:0003723
Dere03g0147 656 Gene3D - 217 301 IPR012677 -
Dere03g0147 656 MobiDBLite consensus disorder prediction 405 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0147 Dere-ChrDere03 4940544 4943217 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0147 217 294 Eukaryotic Initiation Factors Gene Family AT2G23350 35.366 6.70e-07 50.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g0147 03 4940544 4943217 Dere03g0147 03 4940544 4943217 ECH