Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0137 ATGGCAATCCTACTCTCATTCACATTCCTCCTTCTACTTCTCGTTCCTTCCTTCATTCTCTCTTCCCCGCTTCAAGATCCCGAATTAGTAGTCCAACAAGTACACAAGAGCATCAATGACTCCAGGAGAAACTTGGCGTTCCTTTCTTGTGTGACTGGGAACCCCATTGATGATTGCTGGAGGTGTGACTCCAACTGGGAAAAGAACCGAAAGCGTCTAGCAGATTGTGCCATTGGGTTCGGAAAGCAAGCCATTGGAGGCAGAGATGGTAAGATATATGTCGTCACTGACCCTGGTGATCACCCTGTGAACCCTAAGCCAGGAACACTGAGATACGGCGTTATACAGAACGAGCCGTTGTGGATCATCTTCAAGCATGACATGGTGATCAGGTTGAAGCAGGAGCTTCTGATGAACTCCTTCAAAACCATCGATGGCAGAGGAGCAAATGTACACATCGCAGGTGGCCCTTGCATTACTATACAGTATGTGACCAATATCATAATCCATGGCATCAACATTCACGATTGTAAACAAGGAGGGAATGCCTATGTTAGGGATTCTCCTACACATTATGGGTGGAGGACGGTGTCCGACGGTGATGGGATTTCCATTTTTGGAGGAAGCCACGTCTGGGTGGATCATTGTTCATTATCTAATTGCCTCGATGGGCTTATTGATGCAATTCATGGATCCACTGCTATCACAATCTCTAACAACTACATGACGCACCACGACAAGGTCATGCTTCTGGGTCATAGTGATACTTACAAACAGGACAAGAATATGCAGGTCACCATTGCTTTCAACCATTTTGGTGAAGGGCTAGTCCAGAGAATGCCAAGATGCAGACATGGATACTTCCATGTGGTGAACAACGACTACACTCACTGGAAAAAGTATGCTATCGGTGGAAGTGCTGCCCCAACTATCAATAGCCAAGGCAATAGATTTCTTGCTCCCAATGACAACACCTTCAAAGAGGTTACGAAGAGGGAGAATTCGCCGCAGAGCCAATGGAAGAACTGGAACTGGAGATCTTCAGGGGATCTGATGCTAAACGGTGCGTTTTTTACGCCATCTGGGAAGGGAGCATCTTCAAGCTATGCTCGAGCATCGAGCTTGTCGGCAAAACCATCTTCAGTGGTTGGTTCTATAACAGCAGGAGCTGGAACACTTAACTGCAGAAAGGGCTCGCGCTGCTGA 1206 0.4701 MAILLSFTFLLLLLVPSFILSSPLQDPELVVQQVHKSINDSRRNLAFLSCVTGNPIDDCWRCDSNWEKNRKRLADCAIGFGKQAIGGRDGKIYVVTDPGDHPVNPKPGTLRYGVIQNEPLWIIFKHDMVIRLKQELLMNSFKTIDGRGANVHIAGGPCITIQYVTNIIIHGINIHDCKQGGNAYVRDSPTHYGWRTVSDGDGISIFGGSHVWVDHCSLSNCLDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDTYKQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWKKYAIGGSAAPTINSQGNRFLAPNDNTFKEVTKRENSPQSQWKNWNWRSSGDLMLNGAFFTPSGKGASSSYARASSLSAKPSSVVGSITAGAGTLNCRKGSRC 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0137 401 PRINTS Pollen allergen Amb family signature 343 367 IPR018082 -
Dere03g0137 401 PRINTS Pollen allergen Amb family signature 99 124 IPR018082 -
Dere03g0137 401 PRINTS Pollen allergen Amb family signature 301 320 IPR018082 -
Dere03g0137 401 PRINTS Pollen allergen Amb family signature 135 151 IPR018082 -
Dere03g0137 401 PRINTS Pollen allergen Amb family signature 372 395 IPR018082 -
Dere03g0137 401 PRINTS Pollen allergen Amb family signature 76 93 IPR018082 -
Dere03g0137 401 PRINTS Pollen allergen Amb family signature 199 220 IPR018082 -
Dere03g0137 401 PRINTS Pollen allergen Amb family signature 279 298 IPR018082 -
Dere03g0137 401 PANTHER PECTATE LYASE 18-RELATED 24 399 IPR045032 GO:0030570
Dere03g0137 401 Pfam Pectate lyase 136 318 IPR002022 -
Dere03g0137 401 Gene3D - 53 394 IPR012334 -
Dere03g0137 401 SMART amb_all 127 324 IPR002022 -
Dere03g0137 401 FunFam Pectate lyase 53 394 - -
Dere03g0137 401 SUPERFAMILY Pectin lyase-like 54 392 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0137 Dere-ChrDere03 4850259 4851757 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0137 5 401 Polysaccharide Lyase AT5G63180 76.866 0.0 641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g0137 03 4850259 4851757 Dere03g0137 03 4850259 4851757 ECH
Dere03g0137 03 4850259 4851757 Dere14g0676 14 7177143 7178671 ECH