Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0125 ATGGATAATGGTTTCTCTTCTTCTCGACGTGACACTTTTCCGGCTGGTCTGCGAGTTCTCGTCGTCGATGATGACCCAACATGGCTCAGGATCCTTGAGAAGATGCTCAAGAAGTGCTCCTATGATGTGACTACATGTGGTTTAGCGAGGGAGGCTCTAAACTTGCTTCGTCAAAGAAAAGATGGATATGACATTGTTATCAGCGATGTAAACATGCCAGACATGGATGGTTTTAAACTTCTTGAGCATGTTGGACTTGAGATGGATCTTCCTGTCATTATGATGTCTGTAGATGGAGAAACAAGCAGGGTGATGAAGGGCGTTCAACATGGAGCATGTGATTACCTCCTCAAGCCGATACGAATGAAAGAACTGCGAAACATATGGCAACATGTGTTCAGAAAGAGGATACACGAGGCAAGGGATTTTGAAGGTCATGAAGGCTTTGAGGGCATTCACTTAATGAGAAATGGATCAGATCAGTCTGATGATGGGATCTTGTTTGCTGTGGATGATATGACCTCCCTGAAGAAAAGAAAAGATGTTGATGACAGACACGATGACAAAGAATTTGGAGATCCATCTTCCACAAAGAAAGCTAGAGTTGTTTGGTCTGTGGATCTTCATCAGGAATTTGTTAAAGCTGTGAATCAGATTGGATTTGATAAAGTTGGTCCCAAAAAAATACTTGATTTGATGAATGTTCCTTGGCTGACCAGAGAAAATGTTGCTAGCCACTTGCAGAAATATCGGCTCTACTTGAGTAGGTTGCAAAAAGAAAACGATCAGAAATCTTCCTCAAGTGGGAACAAGCATTCAGATTTAGCTCCAAAAGACTCTCCAGGAGGTTTTGGTTTTCAGAACTCAACAAACAGGCAACAAAATGATGTTGCAGTTGAAAGCTACAAATTTTCAGATGTAACGTCGCAAAGTCACAACACTGAAGCTAAGATTCACGAAGGTGAACTGAAGGGAACTGTTTCAGATTCTACGATAGAAAAAAGAAAAGCTATGTCTGGCAGCATTCCCGATATAAGCCTGAACCATTCCTCCTTTGCACCTCTTGAGTCAGAAGGAAGCCATGCAGTATTTGATTGCACCATCCAAACGACACAGTATACCTGGAGTGAAGTTCCAGAAATGCAACTCGAAAAAGAACATAAGTCACTTCTTCAATTAGAAGATAGCTTCAGCCAGTTACCATTGCATGTCCCGCAGCACCAGATTCAGGTTGATCAATCACAGTCAGTTTCTTCAGTTAGTTCCAATCCCTCTGTCACGGAGGAAGACATTGCTGCCTGTATTGAAACTAAGCCCTTTTACGCTGACTACAAAAGTGATTATTCTAGTTCTGTGAGTTCAATAGGTAGTGCAGTGGACACATTTTCTACTCAGTCCAAGAGCCTGATGGGGAATGGTCAATCTTCAGAACCCATTTCAACTAAACATTTGGGCACGAAAACACAGGGCCTTAACCTCAGTTGCATTTCTGATATGGAATTTTACCCCAAAAACCTACTTTTGGGAGGTGACTTTGCTTCTGTACCTTTGGACGAAGACTTGCATTTCCATTGGTTGCAAGGTGAATGCTATAATATGAATCAGCAAAATATAGAGATGCCAGAGTATTATGATTCAGGGCTTGTTGCAGAAGTTCCAACTCACTTTTATGACTCAGCAGATTATTCCATTGTAGATCAAGGCCTATTCATAGCATGA 1719 0.4165 MDNGFSSSRRDTFPAGLRVLVVDDDPTWLRILEKMLKKCSYDVTTCGLAREALNLLRQRKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKRIHEARDFEGHEGFEGIHLMRNGSDQSDDGILFAVDDMTSLKKRKDVDDRHDDKEFGDPSSTKKARVVWSVDLHQEFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQKENDQKSSSSGNKHSDLAPKDSPGGFGFQNSTNRQQNDVAVESYKFSDVTSQSHNTEAKIHEGELKGTVSDSTIEKRKAMSGSIPDISLNHSSFAPLESEGSHAVFDCTIQTTQYTWSEVPEMQLEKEHKSLLQLEDSFSQLPLHVPQHQIQVDQSQSVSSVSSNPSVTEEDIAACIETKPFYADYKSDYSSSVSSIGSAVDTFSTQSKSLMGNGQSSEPISTKHLGTKTQGLNLSCISDMEFYPKNLLLGGDFASVPLDEDLHFHWLQGECYNMNQQNIEMPEYYDSGLVAEVPTHFYDSADYSIVDQGLFIA 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0125 572 Gene3D - 195 258 - -
Dere03g0125 572 Pfam Response regulator receiver domain 19 128 IPR001789 GO:0000160
Dere03g0125 572 SMART REC_2 17 129 IPR001789 GO:0000160
Dere03g0125 572 Gene3D - 17 182 - -
Dere03g0125 572 ProSiteProfiles Response regulatory domain profile. 18 133 IPR001789 GO:0000160
Dere03g0125 572 CDD REC_typeB_ARR-like 19 133 - -
Dere03g0125 572 NCBIfam myb-like DNA-binding domain, SHAQKYF class 199 252 IPR006447 GO:0003677
Dere03g0125 572 SUPERFAMILY CheY-like 16 140 IPR011006 -
Dere03g0125 572 MobiDBLite consensus disorder prediction 260 291 - -
Dere03g0125 572 SUPERFAMILY Homeodomain-like 197 256 IPR009057 -
Dere03g0125 572 PANTHER TWO-COMPONENT RESPONSE REGULATOR 17 297 IPR045279 GO:0009736
Dere03g0125 572 MobiDBLite consensus disorder prediction 260 274 - -
Dere03g0125 572 Pfam Myb-like DNA-binding domain 201 251 IPR001005 -
Dere03g0125 572 FunFam Two-component response regulator 195 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0125 Dere-ChrDere03 4729685 4733777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0125 11 265 Response Regulator Gene Family AT2G25180 54.545 9.58e-83 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Dere03g0125 Response_reg 2.6e-24 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g0125 03 4729685 4733777 Dere03g0125 03 4729685 4733777 ECH