Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0114 ATGTATTTATCAGAGAAGCCCCGACCTATCGACTTCTACAAGGAAGAAGGGAGCCGAGACATGATGATCGAGGTTGTCTCCAATGGCGAACTCCCACCAACTCACCAACAACCCCCTCAACATCAAATGATTCTTGGCGAGAGTAGCGGTGAGGACCACGAAGTTGAAATCAAGGCTCCCAAGAAGCGTGCTGAGACTTGGGTTCAAGACGAAACACGGAGTTTGATTGCCCTTCGTCGTGAGATGGATGGGCTCTTTAATACATCCAAGTCCAACAAGCATTTATGGGAACAAATATCAGCTAAGATGAGAGAGAAGGGATTCGATCGGTCTCCGACTATGTGCACGGACAAATGGAGAAATCTGTTGAAAGAATTCAAGAAGGCTAAGCACCAAGATAGGGGAAGTGGGTCCGCTAAGATGTCCTATTATAAAGAGATTGAGGAGATTCTGAGGGAGAGGAATAAGAGTATGCAGTACAAGAGCCCTACACCTCCTAAGGTTGATACTTATATGCAATTTGCCGAAAAAGGTATTGAGGATAACAGTATCTCTTTTGGCCCAGTTGAAGCTACTGGCAGACCAACACTCAATCTTGAGAGACGTTTAGATCATGATGGACATCCTCTTGCCATTACTGCAGCTGATGCTGTTGCAGCAAGTGGGGTTCCTCCTTGGAATTGGAGAGAAACTCCTGGAAATGGTGGGGAAGGTCAGTCATGTTTTGGGAGGGTTATATCAGTGAAATGGGGTGATTATACAAGAAGAATAGGTATTGACGGCACTTCCGAGGCCATCAAGGAGGCAATAAGGGCTGCTTTTAGGTTGAGAACTAGACGTGCTTTTTGGTTGGAGGATGATGACCAGATAATCAGAAGCATTGACCGTGACATGCCCTTAGGAAATTACACTCTTCACCTAGATGAAGGGATGGCCATTAAAGTATGCCTCTATGCTGAATCTGACCATATCCCTGTGCATACTGAAGATAAGATCTTTTACACTGAAGATGATTACCGCAATTTTCTGTCACGACGAGGCTGGACATGTCTAAGGGAATTTGATGGCTATAGAAACATTGAGAATATGGATGATCTTCGACCTGGTGCGATATATCGTGGACTTCTCCATATATCTGGCGAACCATTTAACTCCCATTGCAAAAGAAGGGATGCAAGCTGTATGAGCAGTTTCTGTTCAACACCAGCAGACTGGTCGCCTGTTGAGCTTGTTAATTCCAGAGGCAGTGAGTTCAGGTTAGGGGTGCAAATTGTTTTGGTTACTCAATCAGTTTATGGTGGAACTGTGCCTTGTGTACCACTTGGAATCGCCATAGTTTAA 1341 0.4489 MYLSEKPRPIDFYKEEGSRDMMIEVVSNGELPPTHQQPPQHQMILGESSGEDHEVEIKAPKKRAETWVQDETRSLIALRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKHQDRGSGSAKMSYYKEIEEILRERNKSMQYKSPTPPKVDTYMQFAEKGIEDNSISFGPVEATGRPTLNLERRLDHDGHPLAITAADAVAASGVPPWNWRETPGNGGEGQSCFGRVISVKWGDYTRRIGIDGTSEAIKEAIRAAFRLRTRRAFWLEDDDQIIRSIDRDMPLGNYTLHLDEGMAIKVCLYAESDHIPVHTEDKIFYTEDDYRNFLSRRGWTCLREFDGYRNIENMDDLRPGAIYRGLLHISGEPFNSHCKRRDASCMSSFCSTPADWSPVELVNSRGSEFRLGVQIVLVTQSVYGGTVPCVPLGIAIV 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0114 446 Gene3D - 67 129 - -
Dere03g0114 446 PANTHER FI21293P1 42 375 - -
Dere03g0114 446 Pfam Myb/SANT-like DNA-binding domain 66 150 IPR044822 -
Dere03g0114 446 ProSiteProfiles Myb-like domain profile. 59 123 IPR001005 -
Dere03g0114 446 SMART sant 63 125 IPR001005 -
Dere03g0114 446 CDD GT1 65 130 - -
Dere03g0114 446 FunFam trihelix transcription factor GT-1 67 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0114 Dere-ChrDere03 4601685 4606933 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0114 1 375 Trihelix Transcription Factor Family AT3G25990 68.814 0.0 526
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Dere03g0114 Myb_DNA-bind_4 8.5e-21 CL0123