Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0107 ATGATGGCTTCCATCGCCGGATCGAGTTGTGTTGCTTTCAAAACCCCCGCTGTCTCACACAAGTTTGGAGGCTTCTCAAACAAAAAGGTCGGTTATCTTCATCAATGGGCTCCGGTTCACGGAACCAAAGTGAGTGAGCTCCGGTCCCTTTCGGGTATTCACTGCAGATCCAACAGTTCATTATCTGGTATAAGAGCTCAGGTTGCCACTCTTGAAGAAGCAGGAACCGGAGCAGCCCAAAAAGTGGAAGCGCCTGTTGTTGTAGTGACTGGAGCCTCCAGAGGTATTGGCCGGGCAATTGCATTGTCTTTGGGTAAAGCAGGCTGCAAGGTCCTGATTAATTATGCAAGATCATCCAAGGAAGCAGAGGAGGTTTCCAAGGAGATTGAGGCCTATGGTGGACAAGCTCTTACATTTGGGGGAGATGTTTCTAATGAGGCAGATGTGGAGTCAATGATTAAAACTGCAGTTGATGCTTGGGGAACTGTTGACGTGTTAGTAAATAATGCAGGAATCACTAGGGATGGTTTGTTAATGAGAATGAAGAAATCTCAATGGCAGGAAGTTATTGATCTGAATCTCACTGGTGTCTTCCTATGCACCCAAGCAGCTGCTAAAATTATGATGAAGAAAAAGAAGGGAAGGATAATCAACATTGCATCAGTTGTTGGTCTGGTTGGCAATGTTGGACAAGCCAATTATAGTGCTGCAAAAGCAGGAGTGATTGGCCTGACAAAAACTGTTGCAAAGGAATATGCTAGCAGAAACATCAATGTCAATGCAGTTGCTCCAGGGTTTATTGCATCTGATATGACTGCCAAGCTGGGAGAGGACATTGAGAAAAAGATTTTGGAGACAATCCCATTAGGAAGATATGGGCAACCAGAAGAAGTCGCTGGACTGGTGGAATTCTTGGCTCTAAATCCTGCTGCCAGTTACATCACTGGACAGGTGTTAACTATTGATGGAGGAATGGTGATGTAA 984 0.4512 MMASIAGSSCVAFKTPAVSHKFGGFSNKKVGYLHQWAPVHGTKVSELRSLSGIHCRSNSSLSGIRAQVATLEEAGTGAAQKVEAPVVVVTGASRGIGRAIALSLGKAGCKVLINYARSSKEAEEVSKEIEAYGGQALTFGGDVSNEADVESMIKTAVDAWGTVDVLVNNAGITRDGLLMRMKKSQWQEVIDLNLTGVFLCTQAAAKIMMKKKKGRIINIASVVGLVGNVGQANYSAAKAGVIGLTKTVAKEYASRNINVNAVAPGFIASDMTAKLGEDIEKKILETIPLGRYGQPEEVAGLVEFLALNPAASYITGQVLTIDGGMVM 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0107 327 NCBIfam 3-oxoacyl-[acyl-carrier-protein] reductase 87 326 IPR011284 GO:0004316|GO:0006633|GO:0051287
Dere03g0107 327 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 221 249 IPR020904 GO:0016491
Dere03g0107 327 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 214 222 IPR002347 -
Dere03g0107 327 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 161 172 IPR002347 -
Dere03g0107 327 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 234 253 IPR002347 -
Dere03g0107 327 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 85 270 - -
Dere03g0107 327 FunFam 3-oxoacyl-[acyl-carrier-protein] reductase, chloroplastic 84 327 - -
Dere03g0107 327 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE 81 326 - -
Dere03g0107 327 Pfam Enoyl-(Acyl carrier protein) reductase 91 325 - -
Dere03g0107 327 Gene3D - 84 327 - -
Dere03g0107 327 PRINTS Glucose/ribitol dehydrogenase family signature 208 224 IPR002347 -
Dere03g0107 327 PRINTS Glucose/ribitol dehydrogenase family signature 255 272 IPR002347 -
Dere03g0107 327 PRINTS Glucose/ribitol dehydrogenase family signature 288 308 IPR002347 -
Dere03g0107 327 PRINTS Glucose/ribitol dehydrogenase family signature 161 172 IPR002347 -
Dere03g0107 327 PRINTS Glucose/ribitol dehydrogenase family signature 86 103 IPR002347 -
Dere03g0107 327 PRINTS Glucose/ribitol dehydrogenase family signature 234 253 IPR002347 -
Dere03g0107 327 CDD BKR_SDR_c 86 326 - -
Dere03g0107 327 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 86 327 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0107 Dere-ChrDere03 4455119 4458358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0107 1 327 Acyl Lipid Metabolism Gene Families AT1G24360 65.957 1.24e-153 432