Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0105 ATGGAATCCGATTCAGACTCAGACGGATCTCATGTGTCTGCGACGCCACCCAGAGAAGAACGTTCATCATCCTTCTCTGCACAACCGCCGCCGCAGCCACCTGTTATCATCTGCAACAAATTCAAATCGTCTCCTTCGTGCAGCTCGAAATCTTCGAAATCCAAAATACGCCGTTCAAGACTAACCGAAGTGCTGTCCAAACCAGAATCTACTAAAAAAGAATTGCCCTCTAACCCCTTTTGCCTCCCTTCTTTACCCTTCCAAATTCGTCGACCTTCTGATTGTGTTCCCCTACTATCAACTGCACAGTCTATTGAAACACTCCCTGCTGGATACTTCTCTAAATCCACGTCATTTTCGAAAATTCGAAGGCCCGCACTCAATTTTGTTGATTCTTCTGGAAGCGAGCCTCTTGATTCTGTTTCTAATCTAGGTCCCAATAGCGAGAGTAATGGGAGTTATTGTCGGCAGGGTGACTCAGTGCCAGCAGAAGTAGAGCGCGAAAATCAAAGTGGTAGGAACTTGGCAAAAGTAGAAAAGAGACATCCTAATCTGATAGGAGCTAACGTGCCTGCCCCACCTGTTAAGCTGCGAAAAGATGGTGGCGAGGGCAACTTTGTAAGGTTGAACTTGAATAGGAAGAGGTGGAAGATACTGAATCAGGGGAGAAAGAAAAATTTTACATATAGTAGACGTAAAAGTTACAAGAAATATAGAGGTAAATCGAAGCATGAAGCACAGGATCAAATGCAGTCGATCTTTGAGTCTGAGGAGGATGCCTTTGTTGCACAGACAGCACAAAAGAAGTCCAGGGACTCTTGTGGAACCAAAGAATTTAATTGCAAACTGATTGAAGAGGCGGTTTTAGCAGTTCGAGGTGACCCATCCGATGAGAACTTGGTGAACTTGCTAAAATTAGTTCATGGTTATGATTCTTTTCGGGATGGGCAATTGGAGGCAATCAAGATGGTACTTGCTGGGAAGTCGACGATGCTTATTTTGCCCACTGGTGCAGGAAAGTCCCTATGTTATCAATTACCCGCTATGATCTTACCTGGGATTACCCTCGTTGTCAGTCCATTGGTAGCCTTGATGATTGATCAACAAAGACAATTGCCTCCGATGATTAATGGTGGACTTATTTGCAGTAGTCAGACACCTGAAGAAGCCTCTGAAACGCTGAAGCAACTTCAACAAGGTGCAATGAAGGTGCTTTTTGTTTCACCAGAGAGGTTCCTGAATGAAGAGTTTCTGTCAATAATTTCTACTACTTCAGCTGTATCTCTTGTTGTGGTTGATGAAGCACATTGTATATCTGAATGGTCACATAATTTTCGCCCTTCATTCATGAGGCTTAGGGCTTCTTTACTCCACAACAAGCTCAGTGCAGGCTCTATCCTTGCTATGACAGCAACTGCTACAAACATAACCTTAGATGCCATCATGTCTGCTCTAGATATTCCTAGGACAAATCTTATTCAGAAGACACAGTTGAGGGACAATATGCATTTATCAGTATCTTTAACCAGAAATAGAATGAAAGACCTATTGATGCTGATCAAATCTCCTCCATTTGTGGAAGTTCAAAGCATCATCATATACTGCAAATTTCAGTCTGAAACTGATGTAATTAGCAGATACTTGAATGACAACAATATCTCTGCAAAGAGTTACCACAGTGGTATCACTGCAAAGGAGCGCATCTATGTACAGGAGTTGTTTAGTTCCAACAAGATCAGAGTGGTTGTTGCAACTGTGGCGTTTGGCATGGGACTAGACAAAAGGGATGTTGGAGCTGTAATTCATTACAGTCTACCGGAAAGTCTGGAGGAGTATGTTCAGGAGATTGGACGTGCTGGAAGGGATGGGAGGTTGTCGTTTTGCCACTTATTTTATGATGATGAGACTTATGTGAAACTCCGTAGTCTAATGTACAGTGATGGAGTAGATGAATATCTTGTGAACAAATTTCTGTGCGAAGTGTTCCCTACTGACAGAATATCCAGTGGGCAAATATGTTCCTTGATCAAAGAACCTGCTTCACGCAGGTTTGACATGAAAGAAGAGGTGATGCTCACACTTTTGACACGCTTGGAGTTGGGTGATATACAATACTTACATTTACTTCCACAAATAAATGCCACTTGCACTTTGAACTTTCACAAGACTCCGCCTAAATTACTTGCCCAAAAGGTTTCTGCAGTTGCTGCAATACTGAAAAGGTCTGAAAATAAACAAGGGCGTTATGTCTGTGACGTGCCCTCTGTGGCCAATGACATGGGGATTACAGCTGTTGAATTATCAAATCAATTGCACAATCTAAAGTTGCTTGGAGAAATAACCTATGAGATGAAGGACTTGGCCTATTGTTATAGGATTGTTAAAGTACCAACGGATTTCTTTTCACTATCAGCTGATCTTACACGATGGTTACATGACGTTGAAAGATCAAAGGTATGGAAACTGGATGCAATGTTTAATGCTGCATATCTTGCTGCAAATATTTGTAATAAGACGCATGGTTGCAGCGGCTCCAATCACACACCATGCTTGCAAAGGAAGATATTGGATTACTTTGCTGGAGTTGATAATAATTGCTTCTTCAAGAAGTTGGATCAAAGCAGTCCTTTCTTGCGAGCAGATATGAAGGTCTTTCTGCAGAGCAATTCACAGGCCAAATTCACACCCAGAGCCATTGCAAGGATAATGCATGGAATTGCAAGCCCAGCCTATCCTTCTACAGCATGGTCTAAAACTCATTTCTGGGGCAGGTATAGGCATGCAGACTTTCAGGTGGTGATGGAAGCAGCAAAGGAAGAACTTAAGAATTTTGTTGGAAAAGACATGCTCTAG 2853 0.4238 MESDSDSDGSHVSATPPREERSSSFSAQPPPQPPVIICNKFKSSPSCSSKSSKSKIRRSRLTEVLSKPESTKKELPSNPFCLPSLPFQIRRPSDCVPLLSTAQSIETLPAGYFSKSTSFSKIRRPALNFVDSSGSEPLDSVSNLGPNSESNGSYCRQGDSVPAEVERENQSGRNLAKVEKRHPNLIGANVPAPPVKLRKDGGEGNFVRLNLNRKRWKILNQGRKKNFTYSRRKSYKKYRGKSKHEAQDQMQSIFESEEDAFVAQTAQKKSRDSCGTKEFNCKLIEEAVLAVRGDPSDENLVNLLKLVHGYDSFRDGQLEAIKMVLAGKSTMLILPTGAGKSLCYQLPAMILPGITLVVSPLVALMIDQQRQLPPMINGGLICSSQTPEEASETLKQLQQGAMKVLFVSPERFLNEEFLSIISTTSAVSLVVVDEAHCISEWSHNFRPSFMRLRASLLHNKLSAGSILAMTATATNITLDAIMSALDIPRTNLIQKTQLRDNMHLSVSLTRNRMKDLLMLIKSPPFVEVQSIIIYCKFQSETDVISRYLNDNNISAKSYHSGITAKERIYVQELFSSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSFCHLFYDDETYVKLRSLMYSDGVDEYLVNKFLCEVFPTDRISSGQICSLIKEPASRRFDMKEEVMLTLLTRLELGDIQYLHLLPQINATCTLNFHKTPPKLLAQKVSAVAAILKRSENKQGRYVCDVPSVANDMGITAVELSNQLHNLKLLGEITYEMKDLAYCYRIVKVPTDFFSLSADLTRWLHDVERSKVWKLDAMFNAAYLAANICNKTHGCSGSNHTPCLQRKILDYFAGVDNNCFFKKLDQSSPFLRADMKVFLQSNSQAKFTPRAIARIMHGIASPAYPSTAWSKTHFWGRYRHADFQVVMEAAKEELKNFVGKDML 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0105 950 FunFam ATP-dependent DNA helicase Q4 281 491 - -
Dere03g0105 950 Gene3D - 499 688 IPR027417 -
Dere03g0105 950 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 321 491 IPR014001 -
Dere03g0105 950 MobiDBLite consensus disorder prediction 8 26 - -
Dere03g0105 950 MobiDBLite consensus disorder prediction 132 160 - -
Dere03g0105 950 MobiDBLite consensus disorder prediction 1 76 - -
Dere03g0105 950 SMART helicmild6 542 623 IPR001650 -
Dere03g0105 950 PANTHER DNA HELICASE RECQ FAMILY MEMBER 290 833 - -
Dere03g0105 950 FunFam ATP-dependent DNA helicase Q-like 5 499 690 - -
Dere03g0105 950 SMART ultradead3 309 498 IPR014001 -
Dere03g0105 950 CDD DEXHc_RecQ4-like 301 494 - -
Dere03g0105 950 Pfam DEAD/DEAH box helicase 315 474 IPR011545 GO:0003676|GO:0005524
Dere03g0105 950 Pfam Helicase conserved C-terminal domain 528 622 IPR001650 -
Dere03g0105 950 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 428 437 IPR002464 -
Dere03g0105 950 MobiDBLite consensus disorder prediction 133 157 - -
Dere03g0105 950 Gene3D - 289 491 IPR027417 -
Dere03g0105 950 NCBIfam RecQ family ATP-dependent DNA helicase 303 647 IPR004589 GO:0004386|GO:0006310
Dere03g0105 950 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 353 641 IPR027417 -
Dere03g0105 950 CDD SF2_C_RecQ 499 632 - -
Dere03g0105 950 MobiDBLite consensus disorder prediction 56 70 - -
Dere03g0105 950 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 512 670 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0105 Dere-ChrDere03 4426791 4433646 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0105 532 655 Eukaryotic Initiation Factors Gene Family AT3G19760 31.746 4.85e-13 70.5