Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0103 ATGGCGGCTGGGAGACATGGGGCTCATCGCGGCACCGAGTATAGGGAATGTGAGTCCAATCTTGATGTTTCAAGGCGGGGTTCTAATAATTCTAAAGAAAGCAATGATCAGATTAGGAATGGTAGCCGTGAAACTGGGAGGCGTCAGAGCAGAGATGAAAGAGCTAGGATTAGTGTTAGGCAGAAAGATATTAGGGAGAGAGAGGTGTTAAATGACAGTTATCAGTCATCTTCCAGTAGAAGCAATTCGGGAGGCAGCAATGGTGGCCATGGTCCCAGACAATTTGGTTTATCTGTTAAGGCTATGGATAGGGAGCCTGGTGAACTTTCCAGCGAGAGTGGGTCTGATGATGCCTTGGAATCAGAACCACAGGTGACATATTGTGAGGATGCAAAAGTTGAAGGAAATGGGCCTCCATCTCCGTCAGAGAGGAAAAGAAAATTTTCACCTATAGTGTGGGATCAGGATGGCAAAGAAATGAATAATTCTTCGAAAGTTAGTGTTTCCACAACAGTGAATTCTCTTCCTCCTCCACCTCCACTGCCAAAAGCATTTGGTCAGTCCCCAAACCCTTCTTTTAGTGGAGTTGAAACACATTCCGGCAAAAATAAAGAAAATGGAAATTTTGAATTGTCGAATGCAGTTAAGCTTCCTCTACCCTCTGAGATGGTTCAGGATGCTGAATCTGAGTCTCATGTTGGCTTTCCTTCCTTCTCTCCAGGGCAGAGTTGGAGTGATAATCAGGAAGCTGAGCAACTACATCGTAAAGATTTTGTTCCAACTCATAATATATCATCTTCAAGATGGGCAGCTGGAGGTGATTCTCCTGGTGATGAAGGAGAAATCCTTGATGATGAGGTGGCTAAAAGGAGGAGGAGATTGTCTCCTGAACTTCTGGAGAACAGGGCAAGAAACAAGCTGTTAATCTCAGAGAAGTCTAAAACAGAAGGTTTGGAAAAAGCTAGAGCATCTGAATCTGAAGAAAGGGGTAGCCTTGGTAGAATCTCCAGTGGGAGTGATTATCCTGGTATTGGATCAGATAAGGATGACTATATGGAGATTGATGGTCAAGGTGGCAAAAGTGATACTGATGCTGATCAATCAGATACTGATCCTGAAGATCTTGATGGTCATCGGGAGACTCCAGAGCCTCTAGCTCCACCCCAAAGGGTTGTCAATATGCTTCAGGGTTGTAGAAGTGTTGATGAGTTTGAAAGAATAAACAAGATAGATGAAGGAACATATGGCGTTGTATACAGGGCCAGTGATAAGAAGACTGGGGATATTGTGGCATTGAAGAAAGTGAAGATGGAAAAGGAAAAGGAAGGCTTTCCTCTTACTTCTCTTAGGGAAATAAACATACTTCTTTCTTTTCACAACCCATCCATAGTTGACGTTAAGGAAGTGGTAGTAGGGAGTAACCTTGATAGTATTTTTATGGTGATGGAATACATGGAACATGATCTCAAAGGGCTTATGGAGGCAATGAAGCAGCCATTTAGCCAGAGTGAAGTAAAATGTCTTATGCTACAGCTTTTAGAAGGTGTAAAGTACCTTCATGACAACTGGGTTCTTCATAGGGATTTGAAGACTTCAAACCTGCTTCTGAATAATAGGGGTGAGTTAAAAATTTGTGATTTTGGGTTGGCTCGTCAGTATGGGAGTCCATTGAAACCTTACACACACCTGGTGGTTACTCTTTGGTACCGGGCACCTGAACTTCTTCTAGGAGCAAAACAGTATTCAACTGCCATTGACATTTGGTCTCTTGGTTGTATAATGGCTGAGCTATTGTCCAAGGAACCACTCTTTAATGGGAAGACTGAGTTTGATCAACTTGACAAAATTTTCAGGACTCTTGGTACACCAAATGAAACAATTTGGCCTGGGTTTTCAAAACTACCTGGAGTCAAGGTCAATTTTGTCAAGCACCAGCTTCCAACTATGGGTGGTTCTGGTTTGGCTGTCCGGCCTACCTTGGTGACTTTGACATTTCCTGCCACATCATTTACTGGATCTCCAGTTCTCTCTGATTCTGGATTTGATTTGTTGAACAAGCTGCTTACTTATGACCCTGAAAAGCGGATCACAGCCAAAGCTGCTCTCAATCATGAGTGGTTCCGTGAAGTTCCTCTTCCCAAGTCTAAAGAATTTATGCCTACTTTCCCTGCTCAGCATGCTCAAGTGACCTACATACAAGAAGCGGATGCGAAGGATTTTAAAAAGTCCAGATCCTTTACGAGATCAGTGCAGGAAGGAGTTGCAGCAAGGCACTTGTTGGTTTGGTTAGAGATGTGTTTTCCTTTGCGTTCTGGTATCCAGATTTATTTCAGAAGAGGTCCTTCTGTGCATTTCGTTGATGAAGAAACTGACAGTAACATTGTGCTTATGAGGGGTTTTGGTTCTCTCAAGCTTGACGTATTAAAAGAGTTGTATTATGAAGCATCAATGATTTGTGAACAGTGTTCCCCGCATTGGGTACAGTATCAAGCATGCAAGTTGAGGAGTTTACCCATTTACTATGGAATTTATAGAACTTCAAATATTGTTCCTTCAAGCTCTCTAGAGGTGGAAGATTCTGATTTGGGTCTAGAATTATGTAACGAAGTTTGTATTGTCTTCTGGAAAATGTGGTTGCTGGGAGAAGTAAAGCATCCAGTTCCAATGGACTTCTGGATAAGCATAGGCCGTGTGCAGCCTTTTCTTTACTTGTTTGGATACATTACGCAGCTGCGGAATTTGTCCAACGGTGAGACTTTTGAGGTGATTCAATATGGTGATGTAAACATTTTTTAA 2796 0.4249 MAAGRHGAHRGTEYRECESNLDVSRRGSNNSKESNDQIRNGSRETGRRQSRDERARISVRQKDIREREVLNDSYQSSSSRSNSGGSNGGHGPRQFGLSVKAMDREPGELSSESGSDDALESEPQVTYCEDAKVEGNGPPSPSERKRKFSPIVWDQDGKEMNNSSKVSVSTTVNSLPPPPPLPKAFGQSPNPSFSGVETHSGKNKENGNFELSNAVKLPLPSEMVQDAESESHVGFPSFSPGQSWSDNQEAEQLHRKDFVPTHNISSSRWAAGGDSPGDEGEILDDEVAKRRRRLSPELLENRARNKLLISEKSKTEGLEKARASESEERGSLGRISSGSDYPGIGSDKDDYMEIDGQGGKSDTDADQSDTDPEDLDGHRETPEPLAPPQRVVNMLQGCRSVDEFERINKIDEGTYGVVYRASDKKTGDIVALKKVKMEKEKEGFPLTSLREINILLSFHNPSIVDVKEVVVGSNLDSIFMVMEYMEHDLKGLMEAMKQPFSQSEVKCLMLQLLEGVKYLHDNWVLHRDLKTSNLLLNNRGELKICDFGLARQYGSPLKPYTHLVVTLWYRAPELLLGAKQYSTAIDIWSLGCIMAELLSKEPLFNGKTEFDQLDKIFRTLGTPNETIWPGFSKLPGVKVNFVKHQLPTMGGSGLAVRPTLVTLTFPATSFTGSPVLSDSGFDLLNKLLTYDPEKRITAKAALNHEWFREVPLPKSKEFMPTFPAQHAQVTYIQEADAKDFKKSRSFTRSVQEGVAARHLLVWLEMCFPLRSGIQIYFRRGPSVHFVDEETDSNIVLMRGFGSLKLDVLKELYYEASMICEQCSPHWVQYQACKLRSLPIYYGIYRTSNIVPSSSLEVEDSDLGLELCNEVCIVFWKMWLLGEVKHPVPMDFWISIGRVQPFLYLFGYITQLRNLSNGETFEVIQYGDVNIF 931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0103 931 Gene3D Transferase(Phosphotransferase) domain 1 487 746 - -
Dere03g0103 931 ProSiteProfiles Protein kinase domain profile. 404 707 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere03g0103 931 ProSitePatterns Serine/Threonine protein kinases active-site signature. 524 536 IPR008271 GO:0004672|GO:0006468
Dere03g0103 931 MobiDBLite consensus disorder prediction 220 389 - -
Dere03g0103 931 MobiDBLite consensus disorder prediction 156 172 - -
Dere03g0103 931 MobiDBLite consensus disorder prediction 8 22 - -
Dere03g0103 931 MobiDBLite consensus disorder prediction 71 89 - -
Dere03g0103 931 CDD STKc_CDC2L1 398 707 IPR045267 GO:0004674|GO:0005524|GO:0006468
Dere03g0103 931 Pfam Protein kinase domain 404 707 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere03g0103 931 PANTHER CELL DIVISION PROTEIN KINASE 402 713 - -
Dere03g0103 931 FunFam Cyclin-dependent kinase G-2 487 736 - -
Dere03g0103 931 SMART serkin_6 404 707 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere03g0103 931 Gene3D Phosphorylase Kinase; domain 1 389 486 - -
Dere03g0103 931 SUPERFAMILY Protein kinase-like (PK-like) 396 713 IPR011009 -
Dere03g0103 931 MobiDBLite consensus disorder prediction 346 383 - -
Dere03g0103 931 MobiDBLite consensus disorder prediction 37 70 - -
Dere03g0103 931 MobiDBLite consensus disorder prediction 282 329 - -
Dere03g0103 931 FunFam cyclin-dependent kinase G-2 isoform X1 389 486 - -
Dere03g0103 931 MobiDBLite consensus disorder prediction 1 208 - -
Dere03g0103 931 MobiDBLite consensus disorder prediction 187 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0103 Dere-ChrDere03 4371148 4378062 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0103 395 726 Core Cell Cycle Gene Families AT5G10270 44.669 5.92e-88 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-PITSLRE Dere03g0103 Pkinase 9.2e-73 CL0016