Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0097 ATGATGGAAGCTGCCGAGGTTGAAGAAAATCTGTTTGCAGCAAGCGATGCCAAGTTACATGGAAAAATGTGCAAGGTTCTATCTACAATGTATTGCAAAGTCTTGTCAATATTTCCATCTTTGGAAGCAGCTAGGCCTAGGAGCAAATCAGGTATTCAGGCATTATGTTCATTGCATGTAGCCCTAGAGAAGGCCAAGAATGTTCTTCAGCACTGCTCAGAGTGTAGTAAACTTTACTTGGCTATAACTGCGGATGCTGTTCTTCTAAAATTTGTGAAGACTAAATCTGCTCTTAAAGATGGCCTTAAGCAGGTGGAAGATATTGTTCCACGATCTATTGGGTGTCAGATTGAGGAGATTGTGAATGAACTTGAGAGTATAACATTTGCCCTTGACCCATCAGAGAAGCAAGTTGGTGATGATTTAATTGCATTGCTTCAGCAAGGGAGACAATTTAGTGACTGCAATGACGGCAGTGAGCTTGAATGCTTTCACCAGGGTGCTATTAGACTTGGAATCACATCTTCAAGAGCAGCTATTACTGAAAGAAGAGCTCTCAAGAAGCTCATAGAAAAAGCTAGAGCTGAGGAAGACAAGCGGAAGGAATTAATTGTTGCATATCTTTTACACCTTATGAGGAAATATTCCAAGTTATTTAGAAGCGAATTGTCAGATGATAATGATTCACAGGGTTCTACTCCTTGTTCTCCCACTATTCAGGGATCTGTTTACTGTGGTGTTCCTGGTGGTCAATGTCAGGCCGTTGACAGAGAGATTTCAAAACGTTGTTCCTTTAGTTATAATTCATATAATAGGAAATCAGGGCAGATGCCCCTTCCGCCTGAAGAGTTAAGATGTCCAATATCTCTGCAGCTTATGTATGATCCTGTCATCATTGCTTCCGGGCAAACATATGAAAGAGTTTGCATTGAGAAATGGTTCAGTGATGGGCACAACACCTGCCCCAAGACTCAACAGAAACTTGTGCATCTTTATTTGACTCCTAATTACTGTGTTAAAGGTCTTGTTACTAACTGGTGCGAACAGAATGGAGTTCCTGCTCCTGATGGCCCTCCTGAGTCTCTTGATTTTACCTACTGGAGATTGGCATTTTCAGAGTCTGAATCAGCAAATTCAAGATCTGTAGACAGTTTCGGCTCATGCAAGTTGAAGGGTGTCAAAGTGGTTCCTTTTGAAGAGAGCAGCGTGTCAGAAGAAGCTGGAGTGGATAATGCTGAAAGTGTGTCTGCACAGGAAGAAGATACTGAGCAGTATCTTAGGTTTTTAAAAATTTTGACCGAAGAGAACAGTTGCATGACTAAATGCAAAGTGGTTGAACAATTAAGGATGTTACTGAGGGATGACGAGGAAGCTAGGATTTATATGGGGGCCAATGGGTTTGTCGAGGCCCTTCTGCAGTTTCTGCAGTCAGCTGTGTCTGAAGGTAATCGGACAGCTCAGGAAAGTGGAGCAATGGCTCTCTTCAACCTTGCTGTGAATAACAACAGAAATAAGGCAATTATGTTATCAGCAGGAGTATTATCGTTGTTGGAGGATATGATTTCTAACTCCAGTTGTTATGGTTGTGCAACGGCCCTCTATCTGAATCTCTCTTGCCTTGAAGAAGCCAAGACTATGATTGGAACGAGTCAGGCTGTCCAGTTCCTAATCAATCTCTTTCAAGCTAACACCGATGTTCAATGCAAGCTAGATTCCCTCCATGCACTCTATAATCTCTCTACGGTCCCCTCGAATATTCCAAACCTCCTTTCATCTGGCATCATTAGTGGCCTTCTATTCCTTCTTTCAGGCCAGAGTGATTCCATGTGGAGGGAAAAATGTGTCGCTGTTCTGACAAATTTGGCTGCTTCTCCTCTGGGAAAGGAGGCAATGATCTCAACTCCTGGACTCATTAGTGCATTGGCTGCGAAATTGGAGTCTGGTGAGCTCCTCGAGCAGGAGCAAGCTGTGTCTTGTCTTTTCATCTTGTGTAATGGGAATGAGAAATGTAGCCACAAGGTCCTGCGAGAAGGTGTAATACCTGCATTGGTTTCAATATCAGTAAATGGTACCCCAAGAGGAAGAGAAAAAGCTCAGAAACTTTTGATGCTCTTTCGAGAGCAGCGACAACGAGACCCTTCACCTGGTAAGACATGTTTGTGCCCCCCAGAAACTAATAATTTGGCTATGCCTCCTTCTGAAACGAAACCGCTGTGTAAGTCAATGTCTAGAAGAATAATTGAGAAGCCTTTCAGATTCTTATGGAAAAGCAAGAGCTATTCTGTTTACCACCTTTAG 2298 0.4273 MMEAAEVEENLFAASDAKLHGKMCKVLSTMYCKVLSIFPSLEAARPRSKSGIQALCSLHVALEKAKNVLQHCSECSKLYLAITADAVLLKFVKTKSALKDGLKQVEDIVPRSIGCQIEEIVNELESITFALDPSEKQVGDDLIALLQQGRQFSDCNDGSELECFHQGAIRLGITSSRAAITERRALKKLIEKARAEEDKRKELIVAYLLHLMRKYSKLFRSELSDDNDSQGSTPCSPTIQGSVYCGVPGGQCQAVDREISKRCSFSYNSYNRKSGQMPLPPEELRCPISLQLMYDPVIIASGQTYERVCIEKWFSDGHNTCPKTQQKLVHLYLTPNYCVKGLVTNWCEQNGVPAPDGPPESLDFTYWRLAFSESESANSRSVDSFGSCKLKGVKVVPFEESSVSEEAGVDNAESVSAQEEDTEQYLRFLKILTEENSCMTKCKVVEQLRMLLRDDEEARIYMGANGFVEALLQFLQSAVSEGNRTAQESGAMALFNLAVNNNRNKAIMLSAGVLSLLEDMISNSSCYGCATALYLNLSCLEEAKTMIGTSQAVQFLINLFQANTDVQCKLDSLHALYNLSTVPSNIPNLLSSGIISGLLFLLSGQSDSMWREKCVAVLTNLAASPLGKEAMISTPGLISALAAKLESGELLEQEQAVSCLFILCNGNEKCSHKVLREGVIPALVSISVNGTPRGREKAQKLLMLFREQRQRDPSPGKTCLCPPETNNLAMPPSETKPLCKSMSRRIIEKPFRFLWKSKSYSVYHL 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0097 765 Gene3D - 415 530 IPR011989 -
Dere03g0097 765 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 466 512 IPR000225 GO:0005515
Dere03g0097 765 SUPERFAMILY RING/U-box 273 356 - -
Dere03g0097 765 FunFam RING-type E3 ubiquitin transferase 279 353 - -
Dere03g0097 765 Pfam U-box domain 281 350 IPR003613 GO:0004842|GO:0016567
Dere03g0097 765 ProSiteProfiles U-box domain profile. 279 353 IPR003613 GO:0004842|GO:0016567
Dere03g0097 765 Coils Coil 176 206 - -
Dere03g0097 765 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 353 IPR013083 -
Dere03g0097 765 SUPERFAMILY ARM repeat 428 705 IPR016024 -
Dere03g0097 765 SMART Ubox_2 283 346 IPR003613 GO:0004842|GO:0016567
Dere03g0097 765 Gene3D - 531 706 IPR011989 -
Dere03g0097 765 SMART arm_5 501 539 IPR000225 GO:0005515
Dere03g0097 765 SMART arm_5 540 581 IPR000225 GO:0005515
Dere03g0097 765 SMART arm_5 582 623 IPR000225 GO:0005515
Dere03g0097 765 SMART arm_5 455 499 IPR000225 GO:0005515
Dere03g0097 765 CDD RING-Ubox_PUB 281 333 IPR045210 -
Dere03g0097 765 PANTHER U BOX DOMAIN-CONTAINING 24 707 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0097 Dere-ChrDere03 4309009 4312552 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0097 2 764 U-box Gene Family AT1G24330 66.154 0.0 1006
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g0097 03 4309009 4312552 Dere03g0097 03 4309009 4312552 ECH