Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0095 ATGGGCCGGGTTCAATTTTGGGCCCATTATGATGCGGATAAACGGGCTATGGAATTAGGGTTCCCCGTTATAAATTGTGAATGCATTTTCCTCTCTCTCCTTAGCCTTCATACGGACGCGGGGTTTGGAGAAGCTGCACAAGCCGCCATGGTGAAGTACTCGAGAGAACCTGACAATCCTACTAAGTCCTGCAAGGCTAGAGGCTCCGACCTTAGAGTCCATTTTAAGAACACTAGGGAGACAGCCTTTGCCATCAGGAAGTTGCCCTTGGCAAAGGCAAAGAGGTACTTGGAGGATGTGCTAGCCCACAAGCAGGCCATTCCCTTCCGGAGGTTCTGTGGCGGTGTTGGGAGGACAGCCCAGGCAAAGAACAGACATTCTAATGGACAAGGACGTTGGCCCGTGAAATCAGCTAAATTCATTCTTGATTTGCTCAAGAACGCAGAGAGTAATGCTGAAGTGAAAGGCTTGGATGTCGATGCTCTCTACATTTCTCACATCCAGGTTAATCAAGCACAGAAGCAAAGACGCCGTACCTACCGAGCTCATGGAAGAATCAACCCCTACATGTCATCTCCTTGCCATATAGAGTTGATATTATCTGAAAAGGAGGAGCCTGTGAAGAAGGAGGCCGAGACCCAGTTGGCAACAAGCAAGAAGTCCTAA 666 0.4895 MGRVQFWAHYDADKRAMELGFPVINCECIFLSLLSLHTDAGFGEAAQAAMVKYSREPDNPTKSCKARGSDLRVHFKNTRETAFAIRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEAETQLATSKKS 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0095 221 ProSitePatterns Ribosomal protein L22 signature. 176 200 IPR018260 GO:0003735|GO:0005840|GO:0006412
Dere03g0095 221 SUPERFAMILY Ribosomal protein L22 50 203 IPR036394 GO:0003735|GO:0005840|GO:0006412
Dere03g0095 221 Hamap 50S ribosomal protein L22 [rplV]. 49 203 IPR005721 GO:0003735|GO:0006412|GO:0015934
Dere03g0095 221 NCBIfam 50S ribosomal protein L22 53 203 IPR005721 GO:0003735|GO:0006412|GO:0015934
Dere03g0095 221 CDD Ribosomal_L22 64 200 IPR001063 GO:0003735|GO:0005840|GO:0006412
Dere03g0095 221 FunFam 60S ribosomal protein L17 50 221 - -
Dere03g0095 221 Gene3D Ribosomal protein L22/L17 50 221 IPR036394 GO:0003735|GO:0005840|GO:0006412
Dere03g0095 221 Pfam Ribosomal protein L22p/L17e 66 201 IPR001063 GO:0003735|GO:0005840|GO:0006412
Dere03g0095 221 PANTHER 60S RIBOSOMAL PROTEIN L17 50 220 IPR005721 GO:0003735|GO:0006412|GO:0015934
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0095 Dere-ChrDere03 4274958 4277026 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0095 50 220 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 89.474 9.67e-114 320