Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0087 ATGGCGGACGAAGAGAAAGAGAACTTGATACGACCAGAATTTCCGATGGGTCGAGTGAAGAAAATCATGAAGCTTGATGAAGAAATCCAGAGGGTGAATTCAGAAGCCTTATTCCTAGTATCGTGTTCCACCCAGCTCTTCCTCCAATTCCTGGCTGAAAAGTCTGCACAGGTTGCCAATGAGAAGAAGCGCAAGACCGTGAAGCTTGAACACATCAGAATCGCCGTTAAGAGAAACCAACCGACAAGTGATTTTCTGCTTGATTCTCTTCCACTGCCCTCTCAGCCCGCTAATCGCCCGCCCAAGGATCGGAGCCAATCTTGCTTAGATAATGATAAACCGCCTCCATCTGGTACTCGCCGTATTGATCATTTCTTCCGAAAGCCTGAAGACCATGCGCCAGAGACGAGAGATGACCCTTAG 423 0.4823 MADEEKENLIRPEFPMGRVKKIMKLDEEIQRVNSEALFLVSCSTQLFLQFLAEKSAQVANEKKRKTVKLEHIRIAVKRNQPTSDFLLDSLPLPSQPANRPPKDRSQSCLDNDKPPPSGTRRIDHFFRKPEDHAPETRDDP 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0087 140 MobiDBLite consensus disorder prediction 84 140 - -
Dere03g0087 140 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 13 76 IPR003958 -
Dere03g0087 140 SUPERFAMILY Histone-fold 9 92 IPR009072 GO:0046982
Dere03g0087 140 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 8 98 - -
Dere03g0087 140 Gene3D Histone, subunit A 1 91 IPR009072 GO:0046982
Dere03g0087 140 MobiDBLite consensus disorder prediction 116 140 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0087 4 128 CCAAT-HAP5 Transcription Factor Family AT5G43250 65.873 9.11e-53 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Dere03g0087 CBFD_NFYB_HMF 1.3e-20 CL0012