Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0074 ATGACAAGCACGAAATGTGGTGGTCAGCACAGTGAAGTGATGCTTGGTCTGTCGCTTGACGCGCAGGAAGCTAGGTTGGTGGCGTTAACTTTCAATGGAAAAAGAAAGCTTGAACTGTGGTCTGTCGCTGCTGTTGCTAAGGTGTTAGTACGAGTTCTACAAAGCAAAATCTTTAGTGGAACTGAAGCTTCCCGTGTTGAAAGTGGAGTATGAACACTGGAGAGCACAAATCAGTGGAATGCAAAATCTCCCTCGCAGTGGGAGTGGGAACACCTATTCATTTTTAACACAAAAGCAACTGAAAATCCTAGGTTACAACCAACAGACTGGAGTGGTGAAGCAGATCGAGAAATCAATGTTGGGTTGTTTTATCCATTGTGCAGTAGTGGTTGTTCTGGGTCTGAGCTAGTACATGTCTCTTCATCAAGGAGCTCAAAGTCAGCTTCCATCAATTCCTCATCAAATGGTTGTAGCAAAGCGTCAGTTTTCACCTTTGAAGGCTCCCAAGAAGATTCTAGTAGTAAGAAAGAAATATCAAAAGAAGAGCCTGTAGGAACTTCTCCCACACTTGAGCATTCTTCTGTCTCTGGTGAACCATTGCTCAGCCTAAAGCTTGGTAAACGGCTGTACTTTGAAGATGTTTGCCCAGGAAGTGATACAAAGAACCCATCTCTCTCTGGGATTTCCATGCCAACTTTGAGTGCTGGAAAAAAATGCAAGTCCAGTAGTCAGAGCTCACAACCTCCATGCTGCCAGGTCGAAGGCTGTAACATTGACCTCTCATCAGCTAAAGATTACCATCGCAAGCATAGAGTTTGTGGAAGTCATTCCAAATCCCCAATCGTGGTTGTAGATGGTTTGGAGCGCCGATTTTGCCAGCAATGTAGCAGGTTCCATGGTCTGTCAGAGTTTGATGAGAAAAAAAGAAGTTGCCGGCGCCGTCTTTCTGATCACAATGCTAGGCGTCGCAAGCCTCATCCTGAAGCTGTCCAGTTGAATACATCACTTTTGTCCTCTTCACCATTTGATGGGAGGCAACAGATGGGCCCGATTTCTTATTCAAGGGCTGCTTTCAACATAGCCTGGCAAGATACATACAGTAGCAGGCTCCCCCAAACAAAAGAATTTCTCATGAAGCCTGCAAAAGCAGGAGGTACCAATGGGCAGGTGCATCAGCCCTACAATGAGGTGCCAAGAACCTTTACTATGTTTTCTGAAGATTCCAGGGGTCTTTGCACATCCAAAGGTATAGCAGCCAAGACTATAAATCCAGAGATAGAAGATTCCGTTACCTCATCAGATCTGAATGCTGCACATGATTTTCACCGTGCTCTCTCTCTTCTGTCAACCACTTCTTGGGTTCCATGTGAGACAAAGTCTGCTTCTCTAGAGCACTCCAATCGCACAACTCACACTGGTGTGACTCAGCCTATAACGTACTCAATGATTCAGCGCTTGCCTCAAGCTTCATCAGAATACTGGCAGACTAATCAACAACTAGTCGACTCTCGTCTGGGTGTCTCATACTCCGATTGTGAGGATGGTAGTCACTTTCAGGATTTCCAGCTGTTTAGAGAACCCTATGAGTCTGACTTTTGCAACCATGTGTTTATTTTGCCCGTTCTGCTTTCCTTATCTTTTTCACATTGGAAATCAGATCTGAGCAGGTCTCAAGCCTATTTGGTGAGAAATGTTGTGCACTAG 1704 0.4507 MTSTKCGGQHSEVMLGLSLDAQEARLVALTFNGKRKLELWSVAAVAKVLVRVLQSKIFSGTEASRVESGVXTLESTNQWNAKSPSQWEWEHLFIFNTKATENPRLQPTDWSGEADREINVGLFYPLCSSGCSGSELVHVSSSRSSKSASINSSSNGCSKASVFTFEGSQEDSSSKKEISKEEPVGTSPTLEHSSVSGEPLLSLKLGKRLYFEDVCPGSDTKNPSLSGISMPTLSAGKKCKSSSQSSQPPCCQVEGCNIDLSSAKDYHRKHRVCGSHSKSPIVVVDGLERRFCQQCSRFHGLSEFDEKKRSCRRRLSDHNARRRKPHPEAVQLNTSLLSSSPFDGRQQMGPISYSRAAFNIAWQDTYSSRLPQTKEFLMKPAKAGGTNGQVHQPYNEVPRTFTMFSEDSRGLCTSKGIAAKTINPEIEDSVTSSDLNAAHDFHRALSLLSTTSWVPCETKSASLEHSNRTTHTGVTQPITYSMIQRLPQASSEYWQTNQQLVDSRLGVSYSDCEDGSHFQDFQLFREPYESDFCNHVFILPVLLSLSFSHWKSDLSRSQAYLVRNVVH 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0074 567 SUPERFAMILY SBT domain 248 330 IPR036893 GO:0003677|GO:0005634
Dere03g0074 567 ProSiteProfiles Zinc finger SBP-type profile. 248 325 IPR004333 GO:0003677
Dere03g0074 567 Pfam SBP domain 251 324 IPR004333 GO:0003677
Dere03g0074 567 Gene3D - 241 312 IPR036893 GO:0003677|GO:0005634
Dere03g0074 567 FunFam Squamosa promoter-binding-like protein 14 242 312 - -
Dere03g0074 567 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 140 383 IPR044817 GO:0003677
Dere03g0074 567 MobiDBLite consensus disorder prediction 170 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0074 Dere-ChrDere03 4098858 4107500 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0074 80 502 SBP-box Gene Family AT5G43270 38.991 3.48e-65 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Dere03g0074 SBP 1.3e-31 No_clan