Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0070 ATGGCAGAGGAGCACTTCATGTATAAACCGTATCCACCAAATGGAGAAGAGAGCACACTCTTTGTACACGTAGGAAAGAGAAGGTCACAAATTTTCTTTATCCCTTACTGGAGTGTACCAGACACATCTCCAAACATAACCCAATATGCACATTACACGTTGGGCAATGTGATTGGCAGAAATACAGAACCGTGTGACGGCTTATTTTACTATGGGGGTGGTTTTAACTTGAGCAAATTTTTACTTCTTGTTGGTGAAGCTGAAAACAAAACAGTTGGAGAGTCTAAGTTCAGTGGAAGGCTGGATCAGGAAGGCCAGCTAGGTTACAATCATGCGTGCTTGATCTCTTTACCTACTCTTTTGACTCTTGGTCCTCCCATGGCAATATTGGAAAAGTACGGGGTATCTAATGCCATTCGGCAGAGAATCACCGGTCTAGAATTCTGTTTACTAGGTTTAAACCACGGAGATTCTGTGGATTTGACAGTGGTTCTCTCATTAGCCTACCTGGAATTAGCTAGAAGTGATACCCGCTGCCTCCTGGAACTGTTTCTTGTTAACTTGTGTTGGTTACTGTTGTGGATGAGTTTGCTCTATGTAGTTGGGTTTGGTCCAAAGGTGGGGCATCTACTTTTGGTGCTGTGTTGCTGGATTGTGTCTGTCATATACATGAGCTGGTTCAACAACGGTGGAATTATGGACACCAAGGTTGGTTTTCTTGGTGGTGGTGGAAAGATATGGCTCAAGTGGTGGGAGAAGATCTCAGGGAATAGTTGTAAAATCCACCAACACTACTACCAGTATATTGGGTCCAAGAAAGTGAAGAGAACTCTGTGGAGAAAGCTTTTGCTGACATGGGTACTGGGATGGACCATGGTATCTTTGTGGATCCTCTGCTACATGACCTTTCAAGCAACTGAGAAGAGGAAAGAGACTCTGGCGAGTATGTGTGATGAGAGGGCTAGGATGCTTCAGGATCAGTTTAATGTTAGTATGAACCATATCCAAGCCATGTCAATTCTCATCTCAACCTTCCACCATGCCAAGTCGCCCTCTGCCATCGATCAGAGAACATTTGCTAGGTACACAGAACGAACTGCTTTTGAGAGGCCCCTTACAAGTGGTGTTGCGTATGCTGTGAGGGTGCTCCATTCTGAAAGGGAACAATTCGAGAAGCAACAAGGGTGGACCATTAAGAGGATGGATACCCTTGAGCAGAACCCCGTTCATAAGGATGACTACGCCCCTGAGGCATTGGAGCCTTCCCCCGTTCGGGAAGAATATGCTCCTGTCATTTTTGCACAGGATACAATTTCCCATGTCATTTCTGTCGATGTGCTTTCCGGAAAGGAAGATCGTGAAAATGTGTTGCGTGCAAGAGAATTAGGGAAAGGGGTTTTAACTGCTCCTTTTAGGCTGCTCAAAACAAATCGTCTGGGAGTTATACTCACATTTGCTGTCTACAAGACAGATCTTCCATCAAATGCAACCCCAAACGAAAGGATCCAAGCAACAGATGGATATCTTGGTGGCGTCTTTGATATTGAGTCATTGGTGGAAAAATTACTTCAACAACTTGCTAGCAAGCAAACTGTAATTGTTAATGTATATGATACTACTAATCATTCCCAACCTATTCCCATGTATGGTTCAAATGTGTCAGATGACGGATTCCATCATGTCAGCTCCCTGAACTTTGGAGATCCTTTCCGGAAGCATGAGATGCACTGCAGGTTCAAACAGAAACCTCCGTGGCCATGGTTGGCAATTACTACATCAATTGGTATCCTTGTCATTGCACTCCTTGTAGGGCATATTTTCCATGCTACTGTGAATCGAATTGCTAAAGTGGAGGAGGATTACCGTGAGATGATGGAACTTAAAAAACGAGCTGAGGCAGCTGATGTTGCAAAATCTCAGTTCCTGGCTACTGTTTCCCATGAGATCAGAACACCAATGAATGGTGTTCTTGGAATGTTGCATATGCTTATGGACACAGATCTAGATGTAACACAGCAGGAATACGTCAGAACAGCACAGGGTAGTGGAAAAGCTCTAGTGTCACTTATAAATGAGGTTTTGGACCAGGCAAAGATTGAATCTGGTAAGCTAGAGCTTGAGGCAGTGCTGTTTGACCTACGAGCAGTTTTGGATGATGTGTTGTCACTATTCTCTGAGAAATCTCAAGAAAAAGGAGTAGAGTTGGCAGTTTATATCTCAGATCAGGTTCCTGAACTGCTAGTAGGTGATCCAGGAAGGTTTCGGCAAATAATTACCAATCTCATGGGTAACTCAATTAAGTTCACGGACAAAGGACACATCTTTGTCACTGTCCATCTTATTGAGGAGGTTGTGAACTCAATTGAAGTTGCAACGTCAAAGAATACCTTGAGTGGCTTTCCTGTTGCTGACAGGCGCCAAAGTTGGAAAGGATTCAATACCATCAGTCAAGAGGGACCTCTTGGTTCTTTCTCATCTTCCTCCTCTGATTGCATTACTCTTATTGTATCAGTTGAGGATACAGGCGAAGGTATTCCTCTGGAAGCTCAATCCCGCATATTCACTCCTTTCATGCAGGTAGGTCCTTCCATCTCCCGGAAACATGGGGGAACAGGTATTGGGCTAAGCATTAGCAAGTGTTTGGTTGGCCTCATGAATGGGGAAATTGGATTTGTGAGCACACCCAAGATTGGATCAACTTTCACATTTACAGCTGTCCTCACCAATGGATCCCCCATTTCAAATGAGGGAAAAAGTCAGCAAATTAACAACCAACCTAACCTTGCATCCTCAGAATTTCAGGGCATGACAGCACTAGTTATAGACCCCAGACCTGTCAGAGCTAAAGTGTCGAGATATCACATTCAGCGGCTTGGCATTCATGTCGAAATAGCTTCAGATTTAAATCAAGGTTTGTCCATGATAAGCAGTGGGAATATAGTTATTAATATGATCCTGGTCGAACATGAGGTCTGGGATAGGGATTCTGGCATTTCGTCTCAGTTTATCAATAACACAAGGAAAATTGATCGTGGGGTTCCTCCAAAGCTGTTCATTCTCGTTAATTCTGGTAGTTCTTCTAAGTCAAGTTCTATAACATCTGGTGTTCATAATCCTACTGTCATTACAAAACCTTTGAGAGCAAGTATGCTTGCTGCTTCACTACAGCGAGCTATGGGTGTTGGGAACAAGGGGAATTCTCGAAATGGGGAGCTCCCAAGTTTGTCTCTCCGCCGTCTTCTGCTTGGAAGAAAAATCCTCATTGTAGATGACAACAGTGTGAATCGAACTGTAGCAGCTGGAGCTTTAAAAAAGTATGGAGCTGATGTGGTTTGTGTTAACAGTGGAAAAGACGCCATCTCTTTGCTGAAGCCACCCCATCAATTTGATGCCTGTTTCATGGATATTCAAATGCCAGAGATGGATGGGTTTGAAGCTACTAGCAGGATTCGGGAGATGGAACATCTTGTAAACAACGGAGAAATGCCTGTGGAAGCCTCGGAGAATATCTCAAACTGGCATGTACCCATTTTGGCCATGACAGCAGACGTTATTCAGGCAACACATGAGAAATGTCTGAGGTGTGGAATGGACGGATATGTTTCAAAACCTTTTGAAGCTGAACAGCTTTATCGGGAAGTTTCACGGTTTTTCCAATCATCTTGA 3666 0.4375 MAEEHFMYKPYPPNGEESTLFVHVGKRRSQIFFIPYWSVPDTSPNITQYAHYTLGNVIGRNTEPCDGLFYYGGGFNLSKFLLLVGEAENKTVGESKFSGRLDQEGQLGYNHACLISLPTLLTLGPPMAILEKYGVSNAIRQRITGLEFCLLGLNHGDSVDLTVVLSLAYLELARSDTRCLLELFLVNLCWLLLWMSLLYVVGFGPKVGHLLLVLCCWIVSVIYMSWFNNGGIMDTKVGFLGGGGKIWLKWWEKISGNSCKIHQHYYQYIGSKKVKRTLWRKLLLTWVLGWTMVSLWILCYMTFQATEKRKETLASMCDERARMLQDQFNVSMNHIQAMSILISTFHHAKSPSAIDQRTFARYTERTAFERPLTSGVAYAVRVLHSEREQFEKQQGWTIKRMDTLEQNPVHKDDYAPEALEPSPVREEYAPVIFAQDTISHVISVDVLSGKEDRENVLRARELGKGVLTAPFRLLKTNRLGVILTFAVYKTDLPSNATPNERIQATDGYLGGVFDIESLVEKLLQQLASKQTVIVNVYDTTNHSQPIPMYGSNVSDDGFHHVSSLNFGDPFRKHEMHCRFKQKPPWPWLAITTSIGILVIALLVGHIFHATVNRIAKVEEDYREMMELKKRAEAADVAKSQFLATVSHEIRTPMNGVLGMLHMLMDTDLDVTQQEYVRTAQGSGKALVSLINEVLDQAKIESGKLELEAVLFDLRAVLDDVLSLFSEKSQEKGVELAVYISDQVPELLVGDPGRFRQIITNLMGNSIKFTDKGHIFVTVHLIEEVVNSIEVATSKNTLSGFPVADRRQSWKGFNTISQEGPLGSFSSSSSDCITLIVSVEDTGEGIPLEAQSRIFTPFMQVGPSISRKHGGTGIGLSISKCLVGLMNGEIGFVSTPKIGSTFTFTAVLTNGSPISNEGKSQQINNQPNLASSEFQGMTALVIDPRPVRAKVSRYHIQRLGIHVEIASDLNQGLSMISSGNIVINMILVEHEVWDRDSGISSQFINNTRKIDRGVPPKLFILVNSGSSSKSSSITSGVHNPTVITKPLRASMLAASLQRAMGVGNKGNSRNGELPSLSLRRLLLGRKILIVDDNSVNRTVAAGALKKYGADVVCVNSGKDAISLLKPPHQFDACFMDIQMPEMDGFEATSRIREMEHLVNNGEMPVEASENISNWHVPILAMTADVIQATHEKCLRCGMDGYVSKPFEAEQLYREVSRFFQSS 1221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0070 1221 PRINTS Bacterial sensor protein C-terminal signature 869 887 IPR004358 GO:0016310|GO:0016772
Dere03g0070 1221 PRINTS Bacterial sensor protein C-terminal signature 893 906 IPR004358 GO:0016310|GO:0016772
Dere03g0070 1221 PRINTS Bacterial sensor protein C-terminal signature 852 862 IPR004358 GO:0016310|GO:0016772
Dere03g0070 1221 PRINTS Bacterial sensor protein C-terminal signature 834 848 IPR004358 GO:0016310|GO:0016772
Dere03g0070 1221 CDD REC_hyHK_CKI1_RcsC-like 1086 1214 - -
Dere03g0070 1221 Pfam His Kinase A (phospho-acceptor) domain 637 702 IPR003661 GO:0000155|GO:0007165
Dere03g0070 1221 Gene3D - 605 700 - -
Dere03g0070 1221 Gene3D - 701 910 IPR036890 -
Dere03g0070 1221 SMART HKATPase_4 749 909 IPR003594 -
Dere03g0070 1221 SUPERFAMILY CheY-like 1083 1218 IPR011006 -
Dere03g0070 1221 CDD HATPase_EvgS-ArcB-TorS-like 754 907 - -
Dere03g0070 1221 Pfam CHASE domain 353 549 IPR006189 -
Dere03g0070 1221 SMART REC_2 1084 1214 IPR001789 GO:0000160
Dere03g0070 1221 Pfam Response regulator receiver domain 1086 1213 IPR001789 GO:0000160
Dere03g0070 1221 SUPERFAMILY CheY-like 932 1060 IPR011006 -
Dere03g0070 1221 Coils Coil 614 634 - -
Dere03g0070 1221 ProSiteProfiles Response regulatory domain profile. 937 1059 IPR001789 GO:0000160
Dere03g0070 1221 ProSiteProfiles Response regulatory domain profile. 1085 1218 IPR001789 GO:0000160
Dere03g0070 1221 FunFam Histidine kinase 4 354 583 - -
Dere03g0070 1221 FunFam Histidine kinase 4 609 700 - -
Dere03g0070 1221 Gene3D CHASE domain 354 583 IPR042240 -
Dere03g0070 1221 Gene3D - 933 1064 - -
Dere03g0070 1221 Gene3D - 1081 1221 - -
Dere03g0070 1221 SMART HisKA_10 637 702 IPR003661 GO:0000155|GO:0007165
Dere03g0070 1221 Gene3D - 301 353 - -
Dere03g0070 1221 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 749 908 IPR003594 -
Dere03g0070 1221 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 691 904 IPR036890 -
Dere03g0070 1221 CDD PRTases_typeI 1038 1113 IPR000836 -
Dere03g0070 1221 ProSiteProfiles CHASE domain profile. 350 576 IPR006189 -
Dere03g0070 1221 SMART CHASE_2 350 551 IPR006189 -
Dere03g0070 1221 ProSiteProfiles Histidine kinase domain profile. 644 909 IPR005467 -
Dere03g0070 1221 CDD HisKA 637 698 IPR003661 GO:0000155|GO:0007165
Dere03g0070 1221 PANTHER TWO-COMPONENT HISTIDINE KINASE 284 1211 - -
Dere03g0070 1221 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 622 703 IPR036097 GO:0000155|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0070 Dere-ChrDere03 4061270 4068154 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0070 195 1220 Miscellaneous Gene Families AT1G27320 69.761 0.0 1443
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Dere03g0070 CHASE 1.6e-37 CL0165