Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0067 ATGTCAACTGCAAAACCAACCACTAAAATTGAATACGCTGCTTCCCACAAGCCTCGACCCTCAATTCACACTCGAGCATGTTTTGCATGCTCACCATTTGGTTACAATATTAGTGATCTGTACCGAGAAGCTCAAACACGATGGCTGAAGCCTGCAGAAGTGATGTACATTTTACAGAATCATGAACAGTATCAGATCACTCAAGAGGCCCCTCAACAGCCACCCAGTGGATCCTTGTTTCTATTTAACAAAAGAGTTCTGCGGTTTTTCCGTAGAGATGGTCATAGTTGGCGGAAGAAAAGAGATGGAAGAACTGTGGGAGAAGCACATGAACGACTTAAGGTTGGAAATGTTGAAGCCTTAAATTGTTATTATGCACATGGGGAGCAGAACCCCACTTTTCAGAGACGGAGCTACTGGATGTTGGATCCGGCATATGAGCATATTGTTCTGGTACATTACAGAGAAACAAGTGAGGGGAGGTCCAATGCTGGATCTGTCACACAACTGTCACCAGGAACCTCATCTACATTTAGTCAGAGTCCTAGCTCATACACTACCCAGAAGCTAGGGTCGACAACCATGTTTGGTGATTCTTGTGAACCTAATCAGAGTTTCTCCAGTCCTGGATCAGTAGAATTTACATCTGACATAGTCATCAAGAATAATGGAATAGATCACTTGGATGGAACTGATGCAGAGTCAGGAAATTCAACTGAGCATGAGGTTACTCAAGCTTTACGCCGACTGGAGGAGCAGTTAAGTTTGAATGAGACCAGTTTCAAAGAAATTGACTCCATCTGCGGTGAGCAGGAGAACACACATGATTCAAAACCTCAGCAAAATATAGTGGCAATCCACAATCAAGATGTCACTGCAGCTTGGCCTGCACTGAGTGATCATGGCCAATCTTATGATGGATATAGTGGCAGACAAGATGACAGTGGTGAATATCATGATTTACTAGACCATAATTGCTCTGATGGAAATGAAAAGACTTTATCTTGGAAGGAGATGCTGGAATCTTGTAAGCCCTTGCCCATGGCCAATTTACCAGAAAAACATGTATACAAGCCTGCTAGAAATGAAAAATTACTTTCGTCTCCCAGAAGGTTACCAATTGCCGACCAGGAAAACAGTCACTGGCTAAACTTTGGCAGTAACAGTGCTGAAAACTCTGTCTTCTCACTGACTCAAGACATTTGTGGAGTCAGATTTTCTTCGTATTCTTCTATGGTAGAAACTGAAGAAGCTAATTCGGATTACTATGCGAATTTGTTTGACCAAAACCAAATTGAAGCACCTCTGGATGTAGATTCAAGTTTGACTGTTGCACAAAAGCAGAGATTCACAATTAAGGAAGTATCTCCAGAATGGGGTTATGCTACTGAAGCTACAAAGGTCATCATTGTTGGATCTTTTCTCTGTCATCCCTCGGGTTCTGCTTGGGCTTGTATGTTTGGTGATGTTGAAGTTCCCATTGAAATAATTCAAGATGGAGTAATCTGTTGTGAAGCTCCACCTCACCTTCCTGGAAAGGTTACACTGTGCCTTACTTCTGGTAATCGGGAGTCTTGCAGTGAAGTCCGTGAGTTTGAGTATCGCAATAAGACTAGTTGCACTTGCTGCAATTCCTTAGAAACAGAAGGCACTAGAAGTTGTGAAGAGCTGTTATTACTTGTGAGATTTGCGCAGATGATCCTTTCAGATTCGTCTATAAAGAATGACACACTAGAATCTGGGAATCATGAACAGAGAAAACAAAAAGTTGATGATGATTCATGGAGCCATGTTATAGAGGCTCTTCTAGTTGGCAGTGGAACTTCATCTGGTACTGTTGATTGGCTTCTTGAAGAGCTTCTGAAGGATAAGCTGCAGTTGTGGCTTTCTTCCCGATCCCATGAAAGAAATGAAGGGGCTGGCTGTTCTTTGTCCAAAAAGGAGCAGGGCATTATCCACATGATTGCTGGGTTGGGTTTCAAGTGGGCTTTGAACCCCATTCTCAGCTGTGGTGTGAACATAAATTTCCGTGACATCAATGGATGGACTGCCCTGCATTGGGCCGCACGTTTTGGGAGGGAGAAAATGGTTGCTTCACTTATGGCTTCTGGTGCATCTGCTGGAGCAGTGACAGATCCAACTGCACAAGATCCAACTGGTAAAACTGCCGCATCTATTGCAGCCAACAGTGGGCATAAGGGTCTGGCAGGTTATCTTTCTGAGTTATCTCTAACAAGTCATTTGTCGTCCCTCACCCTGGAAGAAAGCGAGCTATCTAAAGGTTCTGCTGAGCTTGAAGCCGAGTTAACTGTAAATAGTGTTTCCAAGGAAAATTTAACAGCCAGTGAAGATCAGATTTCACTCAAAGATACCTTGGCTGCTGTGCGAAATGCAGCTCAGGCAGCTGCACGTATACAGTCTGCTTTTCGGGCACATTCCTTCAGGAAACGGAGAGAGAGAGAAGCTGCCATTTCCGCAGCAGGTATAGATGGATATGGCATTGATGATGATATTCCAGAACTTTCTGTCATGTCAAAACTAGCCTTTCGTAACTCACGTGATTACAATTCAGCTGCCTTGTCAATTCAGAAGAAATATCGAGGTTGGAAAGGTCGCAAAGATTTCTTAGCGTTGCGCCAGAAAGTAGTGAAGATACAGGCCCATGTGAGGGGTTACCAGGTTAGAAAGCATTACAAGATAATATGTTGGGCAGTTGGATTCTTTGACAAGGCTGTACTACGATGGCGGAGGAAAGGAGCTGGTTTACGTGGTTTTCGACAGGAGACAGACTCGATTGATGAAAGTGAAGATGAAGACATTCTCAAGGTGTTCCGAAAACAGAAAGTAGATGTAGCAGTTGAAGAGGCTGTTTCACGGGTGCTGTCCATGGTCGATTCTCCAGATGCTCGTCAACAATATCATCGCATGCTTGAGAAGTATCGTCAAGCTAAGGCTGAACTTGGCAGCACAAGTCAAGATATATCATTATCTACTACTTTAAAGGACACTTCCTATATGGAGGATGATGACTTGTATCAATTTCCCTAG 3048 0.4344 MSTAKPTTKIEYAASHKPRPSIHTRACFACSPFGYNISDLYREAQTRWLKPAEVMYILQNHEQYQITQEAPQQPPSGSLFLFNKRVLRFFRRDGHSWRKKRDGRTVGEAHERLKVGNVEALNCYYAHGEQNPTFQRRSYWMLDPAYEHIVLVHYRETSEGRSNAGSVTQLSPGTSSTFSQSPSSYTTQKLGSTTMFGDSCEPNQSFSSPGSVEFTSDIVIKNNGIDHLDGTDAESGNSTEHEVTQALRRLEEQLSLNETSFKEIDSICGEQENTHDSKPQQNIVAIHNQDVTAAWPALSDHGQSYDGYSGRQDDSGEYHDLLDHNCSDGNEKTLSWKEMLESCKPLPMANLPEKHVYKPARNEKLLSSPRRLPIADQENSHWLNFGSNSAENSVFSLTQDICGVRFSSYSSMVETEEANSDYYANLFDQNQIEAPLDVDSSLTVAQKQRFTIKEVSPEWGYATEATKVIIVGSFLCHPSGSAWACMFGDVEVPIEIIQDGVICCEAPPHLPGKVTLCLTSGNRESCSEVREFEYRNKTSCTCCNSLETEGTRSCEELLLLVRFAQMILSDSSIKNDTLESGNHEQRKQKVDDDSWSHVIEALLVGSGTSSGTVDWLLEELLKDKLQLWLSSRSHERNEGAGCSLSKKEQGIIHMIAGLGFKWALNPILSCGVNINFRDINGWTALHWAARFGREKMVASLMASGASAGAVTDPTAQDPTGKTAASIAANSGHKGLAGYLSELSLTSHLSSLTLEESELSKGSAELEAELTVNSVSKENLTASEDQISLKDTLAAVRNAAQAAARIQSAFRAHSFRKRREREAAISAAGIDGYGIDDDIPELSVMSKLAFRNSRDYNSAALSIQKKYRGWKGRKDFLALRQKVVKIQAHVRGYQVRKHYKIICWAVGFFDKAVLRWRRKGAGLRGFRQETDSIDESEDEDILKVFRKQKVDVAVEEAVSRVLSMVDSPDARQQYHRMLEKYRQAKAELGSTSQDISLSTTLKDTSYMEDDDLYQFP 1015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0067 1015 SMART CG_1_2 40 158 IPR005559 GO:0003677
Dere03g0067 1015 SUPERFAMILY E set domains 451 535 IPR014756 -
Dere03g0067 1015 Pfam IPT/TIG domain 451 534 IPR002909 -
Dere03g0067 1015 Gene3D Immunoglobulins 445 540 IPR013783 -
Dere03g0067 1015 Pfam IQ calmodulin-binding motif 857 875 IPR000048 GO:0005515
Dere03g0067 1015 Pfam IQ calmodulin-binding motif 880 899 IPR000048 GO:0005515
Dere03g0067 1015 Gene3D - 855 902 - -
Dere03g0067 1015 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 36 986 - -
Dere03g0067 1015 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 844 905 IPR027417 -
Dere03g0067 1015 FunFam Calmodulin-binding transcription activator 4 isoform A 560 745 - -
Dere03g0067 1015 ProSiteProfiles IQ motif profile. 878 902 IPR000048 GO:0005515
Dere03g0067 1015 SMART iq_5 797 819 IPR000048 GO:0005515
Dere03g0067 1015 SMART iq_5 877 899 IPR000048 GO:0005515
Dere03g0067 1015 SMART iq_5 854 876 IPR000048 GO:0005515
Dere03g0067 1015 ProSiteProfiles Ankyrin repeat profile. 680 712 IPR002110 GO:0005515
Dere03g0067 1015 FunFam Calmodulin-binding transcription activator 2 854 902 - -
Dere03g0067 1015 ProSiteProfiles IQ motif profile. 798 827 IPR000048 GO:0005515
Dere03g0067 1015 ProSiteProfiles Ankyrin repeat region circular profile. 680 706 - -
Dere03g0067 1015 ProSiteProfiles IQ motif profile. 855 884 IPR000048 GO:0005515
Dere03g0067 1015 MobiDBLite consensus disorder prediction 161 186 - -
Dere03g0067 1015 Gene3D - 572 745 IPR036770 -
Dere03g0067 1015 SUPERFAMILY Ankyrin repeat 650 741 IPR036770 -
Dere03g0067 1015 SMART ANK_2a 680 709 IPR002110 GO:0005515
Dere03g0067 1015 SMART ANK_2a 719 748 IPR002110 GO:0005515
Dere03g0067 1015 FunFam Calmodulin-binding transcription activator 2 445 539 - -
Dere03g0067 1015 ProSiteProfiles CG-1 DNA-binding domain profile. 37 163 IPR005559 GO:0003677
Dere03g0067 1015 Pfam CG-1 domain 43 156 IPR005559 GO:0003677
Dere03g0067 1015 Pfam Ankyrin repeats (3 copies) 662 740 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0067 Dere-ChrDere03 4034406 4043625 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0067 31 1015 CAMTA Transcription Factor Family AT1G67310 53.437 0.0 961
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Dere03g0067 CG-1 6.1e-49 No_clan