Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0062 ATGGATAATAGAGTTGTGGGAAGCTTGAATGGGAATGGTATATTTCCAATGGACTCTTCAACATCCGGATCAATTAAGAGGAGCCGAACACCTAGCAGTGGAATCCAAGTTGCTTCATGCTTGGTTGATGGATGCAATTCAGACCTCAGTAAATGCAGAGAATATCACCGACGCCACAAGGTTTGTGAACTTCACTCTAAGACCCCTATGGTTACAGTTCGGGGTCAGGAACAACGCTTCTGCCAGCAGTGCAGCAGGTTCCATTCATTGGAGGAGTTTGATGAAGGAAAGCGAAGCTGCAGGAAACGCCTTGATGGGCACAACAGACGCCGAAGAAAGCCTCAACCAGAACCCTTACCCGTGAACTCAGCAAGATTTCTTACCGAATACCGAGGTACCAGATTCTTAGCATTCGATCATCCAGAAGTACCTCCAACAAGTCCTATTTTGAGCTGTGCTTGGGGTGGGCCTATTAAAGCTGAGAACAATTATGTGCCCTTCAAGTTTGATGGCAGAAATGGGGCAATTGGTGAATCCTTGAGTGAGCAGGGACAAAGGCAGATTTCATTTCTTCAAGGCACCAAATCTGCATTCCATGGATATTCCGTGAGTGAACTTATTTTAAATTCCAATTTGGCCTCAGAAAATGCAGGCAGCAGCCAGAAAGCATTCCCATCTTGTGCTCGCTCTCTTCTGTCATCAACACCACCTGTGACTCGTGAGGTTGGCTTGAGGCACATGATGCACCCAAATGGTATCCCTCCACCTCTGCACTTGGATGCTTTAGACATGGCGAGCCAGGGCCACAATGCTAATACCAACCTTAATTGCGAGGGAATGTTTGATGGGTCGTCTTCCAGTGGTGCTTACCACAAACTCTTCTCGTGGGAGTAG 894 0.472 MDNRVVGSLNGNGIFPMDSSTSGSIKRSRTPSSGIQVASCLVDGCNSDLSKCREYHRRHKVCELHSKTPMVTVRGQEQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPEPLPVNSARFLTEYRGTRFLAFDHPEVPPTSPILSCAWGGPIKAENNYVPFKFDGRNGAIGESLSEQGQRQISFLQGTKSAFHGYSVSELILNSNLASENAGSSQKAFPSCARSLLSSTPPVTREVGLRHMMHPNGIPPPLHLDALDMASQGHNANTNLNCEGMFDGSSSSGAYHKLFSWE 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0062 297 Gene3D - 31 101 IPR036893 GO:0003677|GO:0005634
Dere03g0062 297 FunFam Squamosa promoter-binding-like protein 14 31 101 - -
Dere03g0062 297 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 19 234 IPR044817 GO:0003677
Dere03g0062 297 SUPERFAMILY SBT domain 38 119 IPR036893 GO:0003677|GO:0005634
Dere03g0062 297 MobiDBLite consensus disorder prediction 1 31 - -
Dere03g0062 297 Pfam SBP domain 40 113 IPR004333 GO:0003677
Dere03g0062 297 ProSiteProfiles Zinc finger SBP-type profile. 37 114 IPR004333 GO:0003677
Dere03g0062 297 MobiDBLite consensus disorder prediction 13 31 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0062 Dere-ChrDere03 4002059 4003346 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0062 36 158 SBP-box Gene Family AT5G50670 63.710 2.48e-52 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Dere03g0062 SBP 5e-31 No_clan