Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0048 ATGGTTTCCGACAAGGGAAAAGGGAAGAAAGGTCTGATCACCAAGACATGGGAGCGATGCAAGTCCATCGGACGTGGGCGCAAGGCATTAGAATCTGCGAGTCTGAGGACAAGAAGCAATTCATGGCCAAACCTCGATACTGCTACGATGAAAGAAGAAAAGCGATCCAAGAAAGGACGTCAGGTGGCTCCCGAAGGTTGCTTCTCCGTGTACGTGGGACCCCAAAGGCAAAGGTTTGTGATCAAAACAGAGTACGCTAACCACCCTCTGTTCAAGATGCTGCTGGAAGAAGCAGAGTCGGAGTACGGCTATAGCAGCCAAGGCCCTTTAACACTTCCTTGCGACGTCCATATTTTCCACAGGGTATTAATGGAAATGGACCAAGCCACTGAAGAAATCCCTCATGGCTGTGCTTTTCGAAAGCGCTCTAGGTCTTATCACCTTCTCAGCCCATCTCCTCTGCTTTCCATAAATCCCTTTCCATTGTTCAATCAATCAATCATGGATTCATTTACGATTCTGAACAACAGTACAGCATCCTGTTTTGTTGCAATCGCGAAGTGGCCGAGAGTGAGACATCAGAATCTCAAAATCCGGCAGCGGCAGACAGCGAATCGGAGAAAGCGGGTGATGGCGGCAGATACCCACTCGCTGACTATTCTCCATGGTGCTGTGATTATAACCTTGGACGATGACAGCCGAGTATTTCGGGACGGCGGCATCGCCATTGAACGACATCAAATCAAAGCCCTTGGTCCATCTTCCGTCATCCTTCATCAGTTTTCGGCTTTCGCCACCCAGATTATCGATCTCCACGGCCATATCTTACTTCCTGGATTCATTAACACGCACGTTCATACTTCTCAGCAACTAGCCAGGGGCATAGCTGATGATGTTGATTTAATCACCTGGTTGCATGGTCGCATTTGGCCATATGAATCCAATATGACAGAAGAGGATTCTTACATTTCCACTTTACTTTGTGGGATCGAACTCATTCACTCCGGTGTTACATGCTTTGCTGAAGCTGGTGGCCAACATGTTTCTGGGATGGCTAGAGCAGTGGAATTACTGGGTTTACGTGCGTGTTTGACCCAGTCAACCATGGATGCCGGTGAGGGTTTGCCATCATCTTGGGCCGCTCGAACTACTGATGATTGTATTCAGTCTCAAAAGGAGAATTATGAGAAGCACCATAATACAGCTGATGGGCGCATCAGAGTGTGGTTTGGAATAAGACAAATTATGAATTCTACTGAACGCTTGCTTCTTGAGACAAGAGACGTAGCAAGAGAAATGAAAACAGGAATACACATGCATGTTGCAGAGATACCATTTGAGAATCAACTTGTCATGGATGTTCACAAAGTAAATCATGGAACTGTTACATACTTGGAGAAGATAGGTTTTCTGCAAAACAATCTATTATCAGCTCACACAGTCTGGGTTGATGATAGTGAGATATCTTTCCTGTCAAGGGCTGGGGTCAAAGTGTCTCACTGTCCTGCTGCTGCAATGCGAATGCTTGGATTTGCACCTGTAAGGGAGATGCTAAATGCTGGCATCTGTGTCTCCTTGGGAACTGATGGGGCACCATCAAACAATCGAATGAGCATTGTTGATGAGATGTACATAGCTTCTCTAATTAACAAAGGGCGGGAAGTTTATGTAAATGGAACTACAGACCCAACAGCATTGCCTGCTGAAACAATTTTAAGAATGGTTACAATTAATGGTGCAAAGTCAGTATTATGGGACAATGAACTAGGGTCACTCGTGGTTGGCAAGAAGGCTGACATTATTGTAGTCAATCCTTCATCTTGGTCTATGGTTCCTGTTCATGACTGCATTTCCAGCCTCGTGTATTGTATGAGAACAGAAAATGTGGTTTCTGTCATGTGCAACGGTGTATGGATAATGAAGGACAAGAAAATTCAAACTGTAAATGAGGAAGAAGTTATTTCGAAGGCAAAAGAGGCATCTGTTGAACTTCTAAAGAGAGCGGGCATAAGATTAGAGAGTAGAATGAACATCATTTGA 2040 0.4505 MVSDKGKGKKGLITKTWERCKSIGRGRKALESASLRTRSNSWPNLDTATMKEEKRSKKGRQVAPEGCFSVYVGPQRQRFVIKTEYANHPLFKMLLEEAESEYGYSSQGPLTLPCDVHIFHRVLMEMDQATEEIPHGCAFRKRSRSYHLLSPSPLLSINPFPLFNQSIMDSFTILNNSTASCFVAIAKWPRVRHQNLKIRQRQTANRRKRVMAADTHSLTILHGAVIITLDDDSRVFRDGGIAIERHQIKALGPSSVILHQFSAFATQIIDLHGHILLPGFINTHVHTSQQLARGIADDVDLITWLHGRIWPYESNMTEEDSYISTLLCGIELIHSGVTCFAEAGGQHVSGMARAVELLGLRACLTQSTMDAGEGLPSSWAARTTDDCIQSQKENYEKHHNTADGRIRVWFGIRQIMNSTERLLLETRDVAREMKTGIHMHVAEIPFENQLVMDVHKVNHGTVTYLEKIGFLQNNLLSAHTVWVDDSEISFLSRAGVKVSHCPAAAMRMLGFAPVREMLNAGICVSLGTDGAPSNNRMSIVDEMYIASLINKGREVYVNGTTDPTALPAETILRMVTINGAKSVLWDNELGSLVVGKKADIIVVNPSSWSMVPVHDCISSLVYCMRTENVVSVMCNGVWIMKDKKIQTVNEEEVISKAKEASVELLKRAGIRLESRMNII 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0048 679 Pfam Auxin responsive protein 44 123 IPR003676 GO:0009733
Dere03g0048 679 SUPERFAMILY Metallo-dependent hydrolases 278 591 IPR032466 -
Dere03g0048 679 CDD ATZ_TRZ_like 219 646 - -
Dere03g0048 679 SUPERFAMILY Composite domain of metallo-dependent hydrolases 217 296 IPR011059 GO:0016810
Dere03g0048 679 SUPERFAMILY Composite domain of metallo-dependent hydrolases 564 670 IPR011059 GO:0016810
Dere03g0048 679 Gene3D Urease, subunit C, domain 1 221 657 IPR011059 GO:0016810
Dere03g0048 679 Gene3D - 279 583 - -
Dere03g0048 679 PANTHER AMINOHYDROLASE SSNA-RELATED 216 678 - -
Dere03g0048 679 FunFam Amidohydrolase family protein, expressed 279 583 - -
Dere03g0048 679 Pfam Amidohydrolase family 275 638 IPR006680 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0048 Dere-ChrDere03 3838668 3847863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0048 64 123 Calmodulin-binding Proteins AT3G43120 51.667 2.00e-16 75.5