Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0042 ATGGAGAAGGAGGAGAGGGAGAAGAAGCTGAATTTTGTGAAGAATGGGGAGCTTAGATTGCCTCCTGGATTCCGTTTCCACCCAACAGACGAAGAACTCGTTGTGCAATACTTGAAACGCAAGGTCTTGTCCTGCCCTTTGCCTGCCTCTTTCATTCCCGAGGTCCATGTTTGCAAGTCTGATCCCTGGGATTTGCCAGGTAATATGGAGCAGGAGAGGTACTTCTTCAGCACTAGAGAAGCCAAATACTCTAATGGAAGCCGGTCCAACAGAGCCACACATTCAGGATATTGGAAAGCAACGGGGTTAGACAAGCAGATAGTGAGTACAAGAGGGAATCAAGTTGTTGGGATGAAGAAGACTCTGGTTTTCTACAGAGGCAAGCCCCCTCATGGCTCTAGAACCGACTGGATCATGCACGAATATCGCCTCCATGCTCAGACACAGAGCCCCACCGTGGCCATGCAAAACTGGGTACTCTGTCGTATATTCCTGAAAAGAAGAAGTGCAAGTGGGAAGAATGAGGAACAGAGCTTAAGAAGCAGTCGAGATAACAGCAGCCTCAAGTTGAATAGGTCGAGGCCTGTTTTCTATGACTTCTTGGCACAGAGTGCCACTGATTTAAATCGTGCCCCTACTTCGTCGTCCTCGGCAACTAGTGGAATCACACACCTCTCCTCTCATGAATCTGATGAGCACGAAGAAAGTAGTTGCAATAGTACCCCTTATTTTAAAAGAAACCCGTGA 747 0.4779 MEKEEREKKLNFVKNGELRLPPGFRFHPTDEELVVQYLKRKVLSCPLPASFIPEVHVCKSDPWDLPGNMEQERYFFSTREAKYSNGSRSNRATHSGYWKATGLDKQIVSTRGNQVVGMKKTLVFYRGKPPHGSRTDWIMHEYRLHAQTQSPTVAMQNWVLCRIFLKRRSASGKNEEQSLRSSRDNSSLKLNRSRPVFYDFLAQSATDLNRAPTSSSSATSGITHLSSHESDEHEESSCNSTPYFKRNP 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0042 248 SUPERFAMILY NAC domain 16 166 IPR036093 GO:0003677|GO:0006355
Dere03g0042 248 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 19 217 - -
Dere03g0042 248 Gene3D NAC domain 29 170 IPR036093 GO:0003677|GO:0006355
Dere03g0042 248 ProSiteProfiles NAC domain profile. 20 166 IPR003441 GO:0003677|GO:0006355
Dere03g0042 248 MobiDBLite consensus disorder prediction 208 248 - -
Dere03g0042 248 MobiDBLite consensus disorder prediction 208 225 - -
Dere03g0042 248 Pfam No apical meristem (NAM) protein 21 144 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0042 Dere-ChrDere03 3801783 3802711 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0042 10 240 NAC Transcription Factor Family AT5G13180 60.400 1.66e-100 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Dere03g0042 NAM 3e-36 No_clan