Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0035 ATGGTTAGATCCAATTCGCAAACCACCGAGACCGTTCCCTGCGACTTCTGCTCCCAACAGACAGCAGTTCTATATTGCAGAGCTGACTCCGCCAAGCTCTGCTTGTTCTGCGATCAACATGTTCATTCCGCTAACTTGCTCTCTCGCAAACACTTGCGCTCTCAGATCTGTGATAATTGCACTTCCGAGCCTGTCTCCGTTCGCTGCAACACCGACAACCTCGTTCTCTGCCATGACTGCGATTGGGATGCTCATGCCTCCTGCTCCGTCGCTGTCTCTCACCATCGCACTCCTGTCGAAGGCTTCACTGGATGCCCCTCTGCATCTGAGCTCGCTTCTCTCTGGGGTTTCCATTTTGAGACCAAGACATCTGATCAATCTTCTTCTTCATTAATTCAACACTGGGGTGACTATCGGGATTTGTTTATGCCCCTCGATTCCGGCCTGTTTAAATCCGATGGCGTCTCTCTTCAAGTTCACGACTTGATGGTTCCCAGAGAAAACGGCAGGGTGGACCCATCTGGGGAATTCCAGGCTGTCTATAACGCCTCCAAGAAGCAAACTCCGTGCTGTGGGAAGCAGAAGCAGGTTATACATAAGCAGCTGCTAGAATTGCTCAAGAGGGATTCGGTGGTTGTTGATGCTCGTGGCAGTGGCGGTGATGTTGACGGTGACGGTGGTTGTAGTGCAGCTCCAATAACTGCTGTTAACGAGGCAGAGAATTTGGTTCCCCAAGCGCCGAATAAGCGGCAGGGAAATGGGTTCCAAGGATTTCCAGCGACTGCTGCTGCCCAGCAGCCATTGCAGCAGCAAGCGCCAGTTACTCCTTTGCTTATGATGCCTTCGCAGTTGCATCAGAACGAAGGTGATAGGTTGTGGCACAATAATCCCAACAGGCACGCTGTTCAGATATGGGATTTTCGTTCTGGACGACTTCGGGGTCATGAAGAATCAAGTGCACTAGGAGCTGCCTATGCAGCAAGTGATGGAGGATTTATAACTACAAATTTTGGTGAACTTATCAGAGAATCATCCGTGACTGAGGCAAAAATGTTTCAAGATATATACGAGATGAATATTGCTTACGATGATATGGCATCATATAACAACATGTCAAATAACCCAACAGCAAGTCAGGGGCCTGCAACATCGGAGAGCAACAGCCTACCAACAAGAAAGCAATCGGGGGATGCAGCTCTAGACAAGCACAAAGGTTGGTGTAGTGCCAAAGATACGCAGATAGGAGAACATTCTTTGCTGCTCACAGGTGACAATATGGGAAAAGCAGGAAGAAGCAAGGCTGACATTGACCTATTGGCCCAAAACAGGGGCAATGCAATGCTCCGTTACAAGGAGAAAAAGAAAACTCGAAGGTACGAGAAGCACATACGATACGAGTCTAGGAAGATGAGAGCTGATTCTCGGAAACGAGTCAAAGGTCGATTTGTGAAGGCTAGTGAGGGGGAGACCCCTCCTGGGACTTGA 1485 0.4923 MVRSNSQTTETVPCDFCSQQTAVLYCRADSAKLCLFCDQHVHSANLLSRKHLRSQICDNCTSEPVSVRCNTDNLVLCHDCDWDAHASCSVAVSHHRTPVEGFTGCPSASELASLWGFHFETKTSDQSSSSLIQHWGDYRDLFMPLDSGLFKSDGVSLQVHDLMVPRENGRVDPSGEFQAVYNASKKQTPCCGKQKQVIHKQLLELLKRDSVVVDARGSGGDVDGDGGCSAAPITAVNEAENLVPQAPNKRQGNGFQGFPATAAAQQPLQQQAPVTPLLMMPSQLHQNEGDRLWHNNPNRHAVQIWDFRSGRLRGHEESSALGAAYAASDGGFITTNFGELIRESSVTEAKMFQDIYEMNIAYDDMASYNNMSNNPTASQGPATSESNSLPTRKQSGDAALDKHKGWCSAKDTQIGEHSLLLTGDNMGKAGRSKADIDLLAQNRGNAMLRYKEKKKTRRYEKHIRYESRKMRADSRKRVKGRFVKASEGETPPGT 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0035 494 CDD Bbox1_BBX-like 13 56 - -
Dere03g0035 494 ProSiteProfiles Zinc finger B-box type profile. 9 56 IPR000315 GO:0008270
Dere03g0035 494 MobiDBLite consensus disorder prediction 371 403 - -
Dere03g0035 494 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 13 487 - -
Dere03g0035 494 MobiDBLite consensus disorder prediction 468 484 - -
Dere03g0035 494 MobiDBLite consensus disorder prediction 468 494 - -
Dere03g0035 494 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Dere03g0035 494 ProSiteProfiles CCT domain profile. 443 485 IPR010402 GO:0005515
Dere03g0035 494 SMART bboxneu5 9 56 IPR000315 GO:0008270
Dere03g0035 494 MobiDBLite consensus disorder prediction 371 394 - -
Dere03g0035 494 Pfam CCT motif 443 485 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0035 Dere-ChrDere03 3755056 3758015 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0035 6 487 C2C2-CO-like Transcription Factor Family AT2G33500 40.000 9.92e-98 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Dere03g0035 CCT 2e-15 CL0281