Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0024 ATGCAATTCGCAAAGCTCGACGACTCTCCTATGTTTCGCAAGCAGATACAATGCCTGGAGGAAAGTTCTGAATCTTTAAGAGATAGAAGTTTGAAATTTTACAAAGGATGCAGAAAATACACTGAAGGACTTGGGGAGGCATACGATGGGGACATTGCTTTTGCAAGTGCTCTGGAAACTTTTGGTGGAGGGCATAATGATCCCATCAGTGTGGCTTTTGGAGGCCCGGTTATGACCAAATTCACTATAGCCTTAAGAGAAATTGGAACATACAAGGAAGTCCTTCGCTCCCAGGTTGAACATATGCTAAATGACAGATTGCTCCAATTTGTTAATATTGATTTGCATGAAGTCAAGGAAGCACGCAAACGTTTTGACAAGGCTAGTCTTATTTATGACCAGGCTCGTGAAAAGTTTCTGTCTTTAAGAAAAGGCACAAAAACTGATGTAGCGACCGCCCTAGAAGAGGAACTTCATAATGCTAGATCTACATTTGAGCAATCTCGGTTTAATCTGGTTACTGCTTTGTCAAATGTTGAAGCAAAGAAGAGATTTGAATTTTTGGAAGCAGTCAGTGGGACCATGGATGCACATCTTCGTTACTTTAAACAGGGGTATGAGTTGTTGCACCAAATGGAGCCATATATTAATCAGGTCCTGACTTATGCTCAGCAATCAAGAGAAAGGTCCAACTATGAGCAAGCAGCTCTAAATGAAAGAATGCAAGAGTACAAAAGGCAGGTTGATCGAGAGAGTAGGTGGTCTTCAAATGGTTCTAATGGGTCTCCTAATGGAGATGGTATACAAGCCATTGGTAGAAGTTCACATAAAATGATAGAGGCAGTTATGCAGTCTGCTGCAAAGGGGAAGGTTCAAACTATTCGACAAGGTTATCTTTCAAAGCGTTCCTCCAACTTAAGAGGTGACTGGAAAAGGAGGTTTTTTGTTCTTGATAGTAGAGGAATGCTGTATTACTATCGTAAGCAGTGCAGCAAATCATCTGGTTCTAGTAGTCAACATTCTGCTCAGAGGAATAGTTCTGAACTTGGTTCTGGACTCTTAAGCCGATGGCTGTCTTCTCATTATCATGGTGGGGTACATGATGAAAAATCTGTTGCTCACCACACAGTGAACCTGCTTACATCAACAATCAAAGTTGATGCTGACCAATCAGATTTAAGGTTTTGCTTCAGAATCATTTCACCAACAAAGAACTACACTTTGCAGGCAGAGAGTGCGCTGGACCAAATGGATTGGATTGAAAAGATCACGGGTGTTATTGCCTCATTGCTGAGTTCTCAGATTCCTGAAAGGTGTTTGCCTGCTAGTCCAATGGGAAGTGGTCATCATAGGTCTGCCAGTGAGAGTAGTTCTTTTGAAAGTTCAGATTTTGATCACTCTGCCGTAGAAGAATATAAATCAGACAGAGGTCTTGCTTCTGCGCAATTTGAACGCCCCTCAAGAAGCTTGCAGCAGCAGCATCGAGCATGTATTAAAAATGAGAAGCCAATTGATGTGCTGCGAAAAGTTTGTGGAAATGATATATGTGCTGATTGTGGGGCCCCTGAACCTGATTGGGCATCATTAAATCTTGGCGTTCTTGTTTGCATTGAGTGTTCTGGTGTTCACCGAAATCTTGGTGTACACATATCAAAGGTTAGGTCTCTTACATTGGATGTTAAGGTGTGGGAACCTTCTGTGATAAATTTATTTCAATCACTTGGAAATACTTTTGCCAACTCAGTCTGGGAGGAATGGTTGCAATCAAGAAGTGCCTTTCAGATTGACCTTGTACCCACAGGCTTAAACAAGTCCGACAAACCACAGGTGCTCTTCATCAGCAAACCTTGTCAATCTGATTCTCTATCTGTGAAGGAAAAATTCATCCACGCAAAGTATGCAGAGAAGCTTTTTGTTCATAAGCCAAAGGACAATCAATATCGTCTCTTGGTGGCACAACAGATCTGGGAGGCTGTTCGTGCTAATGACAAAAAAGCTGTATACCGCTACATTGTTAATTATGAAGTTGATGTTAATGCTGTTTATGAGCAAACATGCAGCTCTTCTTTAACACTTGCCAAAGTAATGTTATTACAAGAGCAGACAAGCCATGATCACAACTCTACTTTAGCAGGGAACTCATTGGACTGGTCCTCTACTTGCCCTTTGAATTTTGTGGGAACAAAAGAAGGTCAGACCATGAATGATCTAGATGGGTGCACCTTACTTCACCTTGCTTGTGAAACTGCAGACATTGGCATGTTGGAACTCCTTCTTCAGTATGGTGCAAATATTAATGTAACTGATTTGAGAGGCCAAACGCCACTCCATCGCTGTATTCTCAAAGGCAGATCTACGTTGGCAAGATTACTTCTCTCAAGGGGAGCTGATCCTCAAGCTGTTGACGAGGAGGGAAGAAACCCCTTTGAGCTTGCTGTACAGTCAAACTTTGACGACAGTGAGGTGCTTGCTTTATTATCTGATTCAAACGGATGA 2496 0.4191 MQFAKLDDSPMFRKQIQCLEESSESLRDRSLKFYKGCRKYTEGLGEAYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLQFVNIDLHEVKEARKRFDKASLIYDQAREKFLSLRKGTKTDVATALEEELHNARSTFEQSRFNLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQEYKRQVDRESRWSSNGSNGSPNGDGIQAIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSSSQHSAQRNSSELGSGLLSRWLSSHYHGGVHDEKSVAHHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQIPERCLPASPMGSGHHRSASESSSFESSDFDHSAVEEYKSDRGLASAQFERPSRSLQQQHRACIKNEKPIDVLRKVCGNDICADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVINLFQSLGNTFANSVWEEWLQSRSAFQIDLVPTGLNKSDKPQVLFISKPCQSDSLSVKEKFIHAKYAEKLFVHKPKDNQYRLLVAQQIWEAVRANDKKAVYRYIVNYEVDVNAVYEQTCSSSLTLAKVMLLQEQTSHDHNSTLAGNSLDWSSTCPLNFVGTKEGQTMNDLDGCTLLHLACETADIGMLELLLQYGANINVTDLRGQTPLHRCILKGRSTLARLLLSRGADPQAVDEEGRNPFELAVQSNFDDSEVLALLSDSNG 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0024 831 Pfam Putative GTPase activating protein for Arf 504 641 IPR001164 GO:0005096
Dere03g0024 831 SUPERFAMILY Ankyrin repeat 657 819 IPR036770 -
Dere03g0024 831 MobiDBLite consensus disorder prediction 253 269 - -
Dere03g0024 831 MobiDBLite consensus disorder prediction 246 270 - -
Dere03g0024 831 SMART ANK_2a 771 800 IPR002110 GO:0005515
Dere03g0024 831 SMART ANK_2a 738 767 IPR002110 GO:0005515
Dere03g0024 831 SMART PH_update 293 430 IPR001849 -
Dere03g0024 831 Pfam Ankyrin repeats (many copies) 758 812 IPR002110 GO:0005515
Dere03g0024 831 Pfam BAR domain of APPL family 6 232 IPR004148 GO:0005515|GO:0005737
Dere03g0024 831 SUPERFAMILY ArfGap/RecO-like zinc finger 500 641 IPR037278 -
Dere03g0024 831 ProSiteProfiles Ankyrin repeat profile. 738 770 IPR002110 GO:0005515
Dere03g0024 831 Pfam PH domain 294 427 IPR001849 -
Dere03g0024 831 ProSiteProfiles Ankyrin repeat region circular profile. 738 769 - -
Dere03g0024 831 SMART arf_gap_3 501 646 IPR001164 GO:0005096
Dere03g0024 831 ProSiteProfiles PH domain profile. 292 428 IPR001849 -
Dere03g0024 831 CDD BAR_SFC_plant 14 215 IPR035670 -
Dere03g0024 831 CDD ArfGap 504 633 - -
Dere03g0024 831 Gene3D Arfaptin homology (AH) domain/BAR domain 4 251 IPR027267 -
Dere03g0024 831 ProSiteProfiles Ankyrin repeat region circular profile. 771 803 - -
Dere03g0024 831 MobiDBLite consensus disorder prediction 441 461 - -
Dere03g0024 831 ProSiteProfiles Ankyrin repeat profile. 771 803 IPR002110 GO:0005515
Dere03g0024 831 PANTHER CENTAURIN/ARF 3 829 IPR045258 GO:0005096
Dere03g0024 831 SUPERFAMILY BAR/IMD domain-like 6 315 IPR027267 -
Dere03g0024 831 SUPERFAMILY PH domain-like 207 427 - -
Dere03g0024 831 Gene3D Arf GTPase activating protein 481 644 IPR038508 -
Dere03g0024 831 Gene3D - 645 827 IPR036770 -
Dere03g0024 831 SMART 5bar 11 218 IPR004148 GO:0005515|GO:0005737
Dere03g0024 831 Coils Coil 227 247 - -
Dere03g0024 831 PRINTS HIV Rev interacting protein signature 555 576 IPR001164 GO:0005096
Dere03g0024 831 PRINTS HIV Rev interacting protein signature 513 532 IPR001164 GO:0005096
Dere03g0024 831 PRINTS HIV Rev interacting protein signature 532 549 IPR001164 GO:0005096
Dere03g0024 831 Gene3D - 285 438 IPR011993 -
Dere03g0024 831 CDD PH_ACAP 295 432 - -
Dere03g0024 831 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 482 647 - -
Dere03g0024 831 Coils Coil 118 138 - -
Dere03g0024 831 FunFam ADP-ribosylation factor GTPase-activating protein AGD3 4 251 - -
Dere03g0024 831 ProSiteProfiles ARF GTPase-activating proteins domain profile. 501 646 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0024 Dere-ChrDere03 3652611 3662390 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0024 513 642 C2H2 Transcription Factor Family AT4G21160 41.985 2.30e-20 91.7