Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g3406 ATGGGTAAATACTCCGATGCTCATATTTGCCAATGTTTGAGTCGCTTGTTAACTTCACGACGAAATCTTCCGGTCACAATTACCAGTGACCGGCGCAAAACCGGAGAACAGTTTGTGCATGAAGTGGTAGCCCTCGCTTACGGACTTCAAGATCTTGGAATCGGATCTGGTGACGTTGTCGCCATCTCTGCTTATAACAGTGATTTGTATCTGGAGTGGTTATTAGCTATTGCTTTTGTTGGAGGAATAGCTTCTCCTCTGAACTATCGATGGAGCTCTGAAGAGGCAAAATTAGCAATTACTGCAGTAAGGCCAGTGATGTTGGTAACTGATGAGAGCTGTTACACATGGTTCTTGAACCTCCAGAATAATGATATTCCATCTCTTAGGTGGCATGTTGTTTTGGCTTCCCCGTCCTTGGAGTTTAGAAAAAAGTGGAATGTACTAGATCCAGAAATGCTAAAGAGGCATCTTGTAAAGCTTCCCCCATTTTGTTACTCCTGGGCACCTGAAGGCGCTGCAATAATATGCTTTACTTCAGGAACTACGGGAAAGCCTAAGGGAGTCACCCTAAGCCATGAAGCTCTTATAATACAATCCCTAGCAAAGATTGCCATTGTTGGCTACAGTGAGGATGATATCTATCTGCATACTGCTCCATTGTGCCATATTGGTGGACTGTCATCGGCAATGGCCATGCTAATGGTTGGTGGTTGCCATGTCTTGATGCCAAAGTTTGATGCCAAATCTGCTGCTGATGCCATAGAGCAATATACTGTGTCATCCCTAATCACAGTTCCTGCAATAATGGCTGATATGGTGTCTTCTATTGGGGACAAGGAGACCTGGAAAGGGGGAGAATTTGTCAAGAAAATACTAAATGGAGGTGGGAGCCTCTCAGTTGAGCTCATCATGTACGCCAACATATTCTTCCCTGAAGCTAGGCTTATCTCAGCTTATGGGATGACTGAGACTTGCTCTTCACTAACATTCCTGACACTCTATGAACCAACACAAGAAACCATGGGGCGGTCCCTACAGATGGTTGCAGATGCAAGATCCAATACCATTAACTTCCCAGAAGGTGTTTGTGTTGGCAAGGCTGCTCCTCATGTAGAACTAAATATATTTGCAGATGGGTCAGGTCATGTGGGGAGAATTTTAACTAGAGGACCACATGTAATGCTCAGGTATTGGGATCAAATTTCGTCAAAGCCATTAGATACCTGGAATGAAGTCTGGCTTGACACAGGTGACATTGGATCAATTGATCATGATGGTAATCTGTGGCTCCTCGGACGAACATATGGTCGGATCAAGAGTGGTGGGGAGAACATTTATCCTGAAGAGGTTGAAGCAATTCTTCAGGAACATTCTGGAATTGCTGGTGTTGTAATTGTGGGAATCCCTGATGCACGCCTGACAGAGATGGTAGTTGCATGTGTCCAATTAAGAAAAGATTGGCAATGGTCAGAGCAGTCTGTTTCGAAAGATTATCACCTTTCTTCAGAGCATCTTCAACAATTTTGTAAGGGAAAGAATTTAAGCAGGTTTAAGATACCGAAGATGTTTATTTTATGGAGGAAGCCTTTTCCACTCACATCAACTGGAAAAATAAGAAGAGACCAAGTCCGAGAAGAACTCATGTATCAACTACATAGTTTGCATAGTAAGATCTGA 1680 0.4339 MGKYSDAHICQCLSRLLTSRRNLPVTITSDRRKTGEQFVHEVVALAYGLQDLGIGSGDVVAISAYNSDLYLEWLLAIAFVGGIASPLNYRWSSEEAKLAITAVRPVMLVTDESCYTWFLNLQNNDIPSLRWHVVLASPSLEFRKKWNVLDPEMLKRHLVKLPPFCYSWAPEGAAIICFTSGTTGKPKGVTLSHEALIIQSLAKIAIVGYSEDDIYLHTAPLCHIGGLSSAMAMLMVGGCHVLMPKFDAKSAADAIEQYTVSSLITVPAIMADMVSSIGDKETWKGGEFVKKILNGGGSLSVELIMYANIFFPEARLISAYGMTETCSSLTFLTLYEPTQETMGRSLQMVADARSNTINFPEGVCVGKAAPHVELNIFADGSGHVGRILTRGPHVMLRYWDQISSKPLDTWNEVWLDTGDIGSIDHDGNLWLLGRTYGRIKSGGENIYPEEVEAILQEHSGIAGVVIVGIPDARLTEMVVACVQLRKDWQWSEQSVSKDYHLSSEHLQQFCKGKNLSRFKIPKMFILWRKPFPLTSTGKIRRDQVREELMYQLHSLHSKI 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g3406 559 ProSitePatterns Putative AMP-binding domain signature. 176 187 IPR020845 -
Dere02g3406 559 Pfam AMP-binding enzyme C-terminal domain 450 538 IPR025110 -
Dere02g3406 559 CDD AFD_class_I 174 540 - -
Dere02g3406 559 PANTHER ACYL-COA SYNTHETASE 5 549 - -
Dere02g3406 559 Gene3D - 3 436 IPR042099 -
Dere02g3406 559 SUPERFAMILY Acetyl-CoA synthetase-like 8 551 - -
Dere02g3406 559 Gene3D - 437 551 IPR045851 -
Dere02g3406 559 Pfam AMP-binding enzyme 23 440 IPR000873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g3406 Dere-ChrDere02 43315691 43322973 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g3406 34 554 Monolignol Biosynthesis Gene Families AT4G05160 27.407 9.09e-35 136