Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g3404 ATGAACTCCACAGAGAACAATGGGCATGTGATGGAAACTCTCCCTAACAATCACTACGACGATGCTTCCCTGAGAGCCATGATTCTATGCACTGGTCAGGTAAACACCGCCGTTTTGAATGCTGCGACGGAGCTCCACCTGTTTGATATCATCGCTGCATCAGAGGGAGAGGGTGGTTTTGTTTCGCCCATCGAAATCGCTTCCAGACTTCCCACACTGAATAATAATAATAATAGTAATGCAGACAGTACTGTGGTGCAAAGGCTGGATCGGATACTGCGTTTACTGGTGGCTCAAGAGCTTCTCACGTTCTCTGTGAGAACCAAGGAAGATGGCAACTCCCAGAGGCTCTACGCCCTTTCTCCCATTGGTCAGTACTTCGTCTCAAAAGAAGATGGTGCTTCTTGGGCATCCCTGATGTCTGGTATCTCCTATCATCCTCACATGTCACAGATTTTTCTACACTTGAAGGATGCCATACTTAATAGTGGCGATGACCTAAGCAAGATAGTTCATGGGAAGACTATGTATGAGTACATGGAGACGGATCCAGTGATGAAACACAAGTTCCATAGGGCAATGGCTGATCTTTCTGCATTACACATGAAGAAGGTTCTTGAGATATACAAAGGCTTTGAGGGATTGTCAACGCTTGTTGATGTGGCAGGTGGTATTGGGCAATCCCTCAGAATCATCACATCCAAGTACCCTTCAATTAAGGGCATTAATTTTGATTTGACCCATGTGATTCAAGATGCCCCAACCTATCCAGGAATAAAGCACGTTGGAGGAGACATGTTTGAAAGTGTTCCTGAAGGTGATGCTATTATGATAAAGGGCACAACTCATAATTGGTCAGATGAAAAATGCATAAAGATTTTCAAAAATTGCCACAAGGCTTTAAATGAAGATGGGAAGGTCATTGTGATAGACTTGATAATGCGAGAAGAGCCAGAGATAAACAATGCTGCCAAGTTTATTTCCATTTGTGACATTGTCATGTTCTCCCAAGGAGGAGGAATGGAAAGAACTGAGAAGCAATTTGAGGCTTTGTGCAAGAGATCGGGATTTTCTGGGTTTCAACTTGCTTGTCGTGTTTTATCCATCTTAGGAGTCATGGAGTTTTACAAATAA 1134 0.4339 MNSTENNGHVMETLPNNHYDDASLRAMILCTGQVNTAVLNAATELHLFDIIAASEGEGGFVSPIEIASRLPTLNNNNNSNADSTVVQRLDRILRLLVAQELLTFSVRTKEDGNSQRLYALSPIGQYFVSKEDGASWASLMSGISYHPHMSQIFLHLKDAILNSGDDLSKIVHGKTMYEYMETDPVMKHKFHRAMADLSALHMKKVLEIYKGFEGLSTLVDVAGGIGQSLRIITSKYPSIKGINFDLTHVIQDAPTYPGIKHVGGDMFESVPEGDAIMIKGTTHNWSDEKCIKIFKNCHKALNEDGKVIVIDLIMREEPEINNAAKFISICDIVMFSQGGGMERTEKQFEALCKRSGFSGFQLACRVLSILGVMEFYK 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g3404 377 Gene3D Vaccinia Virus protein VP39 129 377 IPR029063 -
Dere02g3404 377 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 144 366 IPR029063 -
Dere02g3404 377 PIRSF O-mtase 4 377 IPR016461 GO:0008168
Dere02g3404 377 Pfam Dimerisation domain 38 97 IPR012967 GO:0046983
Dere02g3404 377 Gene3D - 3 127 IPR036388 -
Dere02g3404 377 SUPERFAMILY "Winged helix" DNA-binding domain 19 131 IPR036390 -
Dere02g3404 377 PANTHER O-METHYLTRANSFERASE 32 375 IPR016461 GO:0008168
Dere02g3404 377 Pfam O-methyltransferase domain 153 358 IPR001077 GO:0008171
Dere02g3404 377 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 27 377 IPR016461 GO:0008168
Dere02g3404 377 FunFam Caffeic acid 3-O-methyltransferase 4 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g3404 Dere-ChrDere02 43261754 43264143 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g3404 20 369 Monolignol Biosynthesis Gene Families AT5G54160 46.724 1.15e-103 308