Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g3399 ATGGAGGATTCTGAAGGAGTCCTCAGCTTCGATTTCGAGGGCGGCCTCGACACTGCTCCGGCCAACCAAGCCGCGCCATCCGGGCCTCTGGTCCAATCTGATTCTTCTGCCGCTGCTACAGCCGTAGCCAACGGTGTCGCACCCGGCGCTGCCGACTCTGCGCCGGGCAATGTTCCCGGACGGCGGAGCTTCCGACAGACGGTGTGCCGGCACTGGCTTCGTGGACTGTGCATGAAGGGCGATGCCTGCGGCTTCTTACACCAGTATGACAAAGCGCGGATGCCTGTTTGCCGGTTTTTTAGATTGTTCGGTGAGTGTCGCGAGCAGGATTGCGTGTATAAGCACACCAATGAAGACATCAAGGAGTGTAACATGTACAAGTTAGGATTTTGTCCCAATGGCCCTGATTGCAGGTATAGGCATGCAAAAATGCCTGGACCTCCACCTCCTGTTGAAGAGGTGCTTCAAAAGATTCAGCATTTATATTCTTACAATTATGCTGCCTCTAACAAGTTTTTCCAACAAAGAGGTGCTGGCTATTCTCAACAATCTGAGAAATCTCAGTTTCCACAAGGTCCTAATTCTACAAACCAAGCTGTGCCTGGAAAGCCTTTAGCAGCAGAATCTGGTAATGTCCAGCAGCAGCAGCAACAACAGGCACAACCATCTCAACAGCAGGGTAGCCAGAGTCAAGTGCAAAATATTTCTAATGGTCAGCCCAATCAAGCGACCAGAACTGCGACACCCTTACCTCATGGAATATCTAGGTATTTTATTGTTAAAAGTTGCAATCGTGAAAATCTGGAGCTATCTGTACAACAAGGAGTATGGGCAACTCAAAGAAGCAATGAGGCTAAACTGAATGAAGCCTTTGACTCTGTAGAAAATGTGATATTGATTTTTTCAGTCAACAGAACTCGACATTTTCAGGGTTGTGCAAAGATGACATCTAGAATTGGTGGTTCTGCTACTGGGGGGAACTGGAAATATGCACATGGAACTGCACATTATGGGCGTAACTTCTCAGTGAAATGGTTAAAGTTATGTGAATTGTCATTCCACAAAACGCGCCACTTAAGGAATCCGTATAATGAGAACTTACCAGTAAAGATAAGTAGAGATTGTCAGGAGCTGGAGCCCTCTATTGGTGAGCAGCTGGCATCCTTGCTTTATCTTGAGCCCGACAGTGAACTTATGGCTGTCTCGCTTGCAGCAGAGTCTAAGCGAGAAGAAGAGAAAGCAAAGGGAGTGAATCCAGATAATGGAGGAGAAAATCCAGATATTGTTCCATTTGAGGACAATGAAGAAGAGGAAGAGGAAGAAAGTGACGAAGAGGAGGAGAATTTTGGCCATGGTGTTGTGCCAACTGCTCAAGGCAGAGGTAGGGGCAGAGGTATGATGTGGCCTCCTCACATGCCTATGGGACGTGGAGCCAGACCTATTCCGGGAATGCAGGGTTTTCCCCCGGTAATGATGGGTGATGGATTGTCCTATGGACCTGTGACACCTGATGGATTTGGTATGCCAGATCTTTTTGGTATGGGCCCCCGTGGTTTTGCTCCATATGGTCCCAGGTTCTCTAATGATTTTGCTGGGCCCCCAGCAGCCATGATGTTTCGTGGGCGACCATCACAACCTGGGATGTTTCCGGGGAGCGGGTTTGGGATGATGATGAATCCAGGACGCACTCCCTTTATGGGTGGAATGGGGGCCGCAGGTGCAAATCCACCACGGGCAGGTAGGCCAGGTGGTATGCCTCCGATGTTCCCCCCTCCACCACTGCAACCTCAGAATAGTAGCCGTGTTGCTAGGAGAGATCAAAGAACTAATGACCGGAATGATAGGTATGGTTCAGGATTAGAGCAGGGCAAGGGTCAAGACATGATGAGTCAGAGTGGGGGACCTGATGATGACATGCAATATCAGCAAGGATTCAACGCAGGCCAGGAGGATCAATATACTGGTGGGAACAACCTAAGGAACGACGAGAGTGAAAGTGAGGATGAGGCACCTCGGCGGTCCAGACATGGAGAGGGGAAAAAAAGAAAAGGCGAAGTTTAG 2061 0.493 MEDSEGVLSFDFEGGLDTAPANQAAPSGPLVQSDSSAAATAVANGVAPGAADSAPGNVPGRRSFRQTVCRHWLRGLCMKGDACGFLHQYDKARMPVCRFFRLFGECREQDCVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKMPGPPPPVEEVLQKIQHLYSYNYAASNKFFQQRGAGYSQQSEKSQFPQGPNSTNQAVPGKPLAAESGNVQQQQQQQAQPSQQQGSQSQVQNISNGQPNQATRTATPLPHGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSVENVILIFSVNRTRHFQGCAKMTSRIGGSATGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDSELMAVSLAAESKREEEKAKGVNPDNGGENPDIVPFEDNEEEEEEESDEEEENFGHGVVPTAQGRGRGRGMMWPPHMPMGRGARPIPGMQGFPPVMMGDGLSYGPVTPDGFGMPDLFGMGPRGFAPYGPRFSNDFAGPPAAMMFRGRPSQPGMFPGSGFGMMMNPGRTPFMGGMGAAGANPPRAGRPGGMPPMFPPPPLQPQNSSRVARRDQRTNDRNDRYGSGLEQGKGQDMMSQSGGPDDDMQYQQGFNAGQEDQYTGGNNLRNDESESEDEAPRRSRHGEGKKRKGEV 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g3399 686 Gene3D - 59 121 - -
Dere02g3399 686 MobiDBLite consensus disorder prediction 604 618 - -
Dere02g3399 686 MobiDBLite consensus disorder prediction 177 249 - -
Dere02g3399 686 MobiDBLite consensus disorder prediction 624 660 - -
Dere02g3399 686 SUPERFAMILY CCCH zinc finger 65 88 IPR036855 GO:0046872
Dere02g3399 686 MobiDBLite consensus disorder prediction 567 686 - -
Dere02g3399 686 PANTHER YTH YT521-B HOMOLOGY DOMAIN-CONTAINING 35 678 IPR045168 -
Dere02g3399 686 Gene3D ph1033 like domains 233 393 - -
Dere02g3399 686 MobiDBLite consensus disorder prediction 404 418 - -
Dere02g3399 686 MobiDBLite consensus disorder prediction 661 686 - -
Dere02g3399 686 MobiDBLite consensus disorder prediction 580 597 - -
Dere02g3399 686 FunFam Cleavage and polyadenylation specificity factor 30 kDa subunit 58 119 - -
Dere02g3399 686 Pfam YT521-B-like domain 255 389 IPR007275 GO:0003723
Dere02g3399 686 ProSiteProfiles Zinc finger C3H1-type profile. 117 144 IPR000571 GO:0046872
Dere02g3399 686 MobiDBLite consensus disorder prediction 404 464 - -
Dere02g3399 686 MobiDBLite consensus disorder prediction 429 447 - -
Dere02g3399 686 SMART c3hfinal6 119 143 IPR000571 GO:0046872
Dere02g3399 686 SMART c3hfinal6 63 89 IPR000571 GO:0046872
Dere02g3399 686 SMART c3hfinal6 91 117 IPR000571 GO:0046872
Dere02g3399 686 ProSiteProfiles YTH domain profile. 255 390 IPR007275 GO:0003723
Dere02g3399 686 ProSiteProfiles Zinc finger C3H1-type profile. 63 90 IPR000571 GO:0046872
Dere02g3399 686 CDD YTH 256 390 IPR007275 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g3399 Dere-ChrDere02 43162546 43178532 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dere02g3399 YTH 1.2e-45 CL0178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere02g3399 02 43162546 43178532 Dere02g3399 02 43162546 43178532 ECH