Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g3360 ATGTCTATAATCGAGACCCCCACCGTCGATTGCGTTCATCAGCGCAGCGGAGGTGGTACCGATCACCACCGCGTCTCATCAAAACGTAAATTAGATGATTACGGGGCTGCCTTCGACGATGACGAGGAGAATTACGCTGATTTCTGTGACTTAGTATCGGTAAGAATGAGGAAAGACGAACCTACGGCCGTAAATTCCTGCAATTCCCACACTGTTAACGGGTCTGTGTCAGATGTTGTTGATACTAGGATATCGGACGCAGTCTCGTATGCTTCTTGCTCGTCCCGGTCCGAGTCAACTCGGTCTTGGTCGAAGTTGCAGTTTTTCATTCGGATGATGTCGGAAGGTAAAACTATGGTAGTGCAAGCTTGTCCACAAGATACGGTGAGATCGATTCACGAACGTATCCAAACAATTACGGGTATTCCTCTGTTTGAACAGAGACTGATATATAGGGGCAAGCAGCTTCAGTGGGAGCAGACTCTGGTAGAATGTTCTATTCAGAACGATGCTAATCTTCAATTGGTTGGGCGCATGCGCAGCACAGAACACCCTCAAGCTTGGCAGGTAATCAACGATATGGTTTCCCTAGTCTGCCGTCTCTGCAGAGGCGAGATGGAACATGATGCTTTGAAAACTATCAAAGGCCTAATGACTGATTACTTAAACATGACTCCTAGAATTGATAATGATTCAGCTTCTGGGTATTTCCAGATATTTATGTCTTCGTCTGCTCCGGCAGTGCTAGTTATGCTCTATATGTCGCCCTATGTAGGCAACAAAGAATGTGCTGATTGTTCTATTAGGCATTTTATGAGTTCCTGTCGCACTACATTGTCAAAGTCATTACATACGAAGTGTGCACGTGTAGTGTTGGAATTCTGCAAATTGCTTAGAAGGGCGGGTTCTGAGGATCCTTTGTATCTCTCTTGTCGGAGCACATTTGGGTCTTTATTGGAGACTGCTAGTGTTTCCTATGTTTCTGAGAGTGAGAAGGAGTTGATTTCAATTCAAGATATATTCCCTTTTGTTCGTGAGCTTGGAAATAGATTGATGAGGGCTTTGGATATGAGTATGGAATCCCCCACTAGTGTAGGGCCATTGTTGAGTGATGTTCGTGATTTTACTGCATTCTTACTCCCTTTAAGGACTAGAATCAGCAAGCAACAAGCTTTCAAGGGTCCATGTTCCTCCAAGACTGACGAAAAACAAAATAAGGACCTCTTACTTGTGGAAGAGAATGAACTTCGTCTTATATTTATTGAATTATTAAAGAAAATGGATGAGTGCCTTAATAAAATGGAGGAATGCTTGGCTGCCAATGAAAGAACAGAGGGGGATAGTCTTTATTCCGCATGGTCTCAGTATCTTTCCATCTTGAAGGAATTATATCACCTTTCTAAGCTCTATGACGGAGCTGAAGAAGAATTTTGGTCTGTTCTGAGACGCCAAAGAAATATGCTGATTCTACTTATCATTCAGTATGCAAAGAGAGCTGATGATCATCAATGGATTCTTGAGCACAAGTGTGTAACAAATTTTGAATCTAGAAGGCATTTGGTGATGCTGTTCTTCCCAGAGGTAAAAGAAGATTATGAGGAATTGCATGAGATGCTCATTGACAGGTCTCACTTGTTGGCAGAATCATTTGAATACATTGCACGGGCTGAGCCTGAATCTCTACATGCTGGTCTGTTTATGGAATTTAAAAATGAGGAAGCTACAGGCCCAGGTGTACTGCGGGAGTGGTTTTTCTTGGTATGTCAAGCAATATTTAATCCACAAAATGCTCTTTTTGTGGCATGCCCAAATGACCGGAGAAGATTTTTCCCTAATCCTGCATCTAAGGTAGATCCTATGCACCTTGACTACTTCACCTTCTCTGGTCGAGTTATTGCATTAGCCTTGATGCATAAGGTGCAGGTGGGTATTGTTTTTGATCGTGCGTTTTTCATGCAATTGGCTGGAAACTATGTTACTGTAGAAGATATACGGGATGCTGATCCTTATTTGTATAGTAGCTGCAAGCAGATATTGGAGATGGATGCTGATTTTATTGATTCAGATGCTTTAGGACTGACCTTTGTGAGAGAGGTGGAGGAATTAGGATCCAGGAAAGTGGTTGAGCTTTGCCCTGGTGGGAAAAGCCTTGTTGTGAATAGTAAGAACAGGGAGAAGTATGTTGATCTTCTTGTACAGGATCGTTTTGTAACATCTATATCTGAGCAGGTTTCTCATTTTGCCCGAGGTTTTGCTGATATTCTTTCCAACCCAAGGCTCCAGCAGTTCTTTTTTCAAAGTTTAGACCTTGAAGATCTTGATTGGATGCTGCACGGGAGTGAAAATATCATTTCTGTTGAAGATTGGAAGGCACATACTGAGTATAACGGCTATAAAGAGACAGATGCTCAGATATCTTGGTTCTGGGAGATTGTTGGGAGAATGTCAGCTGAACAACGGAAGATTCTTCTGTTCTTTTGGACATCTATTAAGTATTTGCCTGTGGATGGTTTCCAAGGTTTGGCTTCCCGTCTCTACATTTACAAGTCCTTGGAACCTGATGATCGCCTTCCTTCATCACACACATGCTTTTTCCGGCTGTGTTTGCCTCCATATCCATCTTTGTCTGTCATGCAAGATCGTCTTCGAATCATCACACAAGAACACATTGGCTGCAGCTTTGGTACTTGGCGCTATAGTTCTGGTGTTCAGATCAATTCAGGGTTGCGAAGTCAATGCTCTTCTGTTAAATGTTTATATTAG 2763 0.4253 MSIIETPTVDCVHQRSGGGTDHHRVSSKRKLDDYGAAFDDDEENYADFCDLVSVRMRKDEPTAVNSCNSHTVNGSVSDVVDTRISDAVSYASCSSRSESTRSWSKLQFFIRMMSEGKTMVVQACPQDTVRSIHERIQTITGIPLFEQRLIYRGKQLQWEQTLVECSIQNDANLQLVGRMRSTEHPQAWQVINDMVSLVCRLCRGEMEHDALKTIKGLMTDYLNMTPRIDNDSASGYFQIFMSSSAPAVLVMLYMSPYVGNKECADCSIRHFMSSCRTTLSKSLHTKCARVVLEFCKLLRRAGSEDPLYLSCRSTFGSLLETASVSYVSESEKELISIQDIFPFVRELGNRLMRALDMSMESPTSVGPLLSDVRDFTAFLLPLRTRISKQQAFKGPCSSKTDEKQNKDLLLVEENELRLIFIELLKKMDECLNKMEECLAANERTEGDSLYSAWSQYLSILKELYHLSKLYDGAEEEFWSVLRRQRNMLILLIIQYAKRADDHQWILEHKCVTNFESRRHLVMLFFPEVKEDYEELHEMLIDRSHLLAESFEYIARAEPESLHAGLFMEFKNEEATGPGVLREWFFLVCQAIFNPQNALFVACPNDRRRFFPNPASKVDPMHLDYFTFSGRVIALALMHKVQVGIVFDRAFFMQLAGNYVTVEDIRDADPYLYSSCKQILEMDADFIDSDALGLTFVREVEELGSRKVVELCPGGKSLVVNSKNREKYVDLLVQDRFVTSISEQVSHFARGFADILSNPRLQQFFFQSLDLEDLDWMLHGSENIISVEDWKAHTEYNGYKETDAQISWFWEIVGRMSAEQRKILLFFWTSIKYLPVDGFQGLASRLYIYKSLEPDDRLPSSHTCFFRLCLPPYPSLSVMQDRLRIITQEHIGCSFGTWRYSSGVQINSGLRSQCSSVKCLY 920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g3360 920 ProSiteProfiles Ubiquitin domain profile. 106 182 IPR000626 GO:0005515
Dere02g3360 920 Pfam Ubiquitin family 109 180 IPR000626 GO:0005515
Dere02g3360 920 FunFam E3 ubiquitin-protein ligase UPL5 781 896 - -
Dere02g3360 920 FunFam E3 ubiquitin-protein ligase UPL5 isoform A 99 194 - -
Dere02g3360 920 Gene3D Hect, E3 ligase catalytic domain 657 739 - -
Dere02g3360 920 SMART hect_3 555 895 IPR000569 GO:0004842
Dere02g3360 920 Pfam HECT-domain (ubiquitin-transferase) 586 889 IPR000569 GO:0004842
Dere02g3360 920 ProSiteProfiles HECT domain profile. 557 897 IPR000569 GO:0004842
Dere02g3360 920 SMART ubq_7 106 178 IPR000626 GO:0005515
Dere02g3360 920 CDD HECTc 536 895 IPR000569 GO:0004842
Dere02g3360 920 Gene3D Hect, E3 ligase catalytic domain 783 895 - -
Dere02g3360 920 PRINTS Ubiquitin signature 117 137 IPR019956 -
Dere02g3360 920 PRINTS Ubiquitin signature 138 158 IPR019956 -
Dere02g3360 920 PRINTS Ubiquitin signature 159 180 IPR019956 -
Dere02g3360 920 FunFam E3 ubiquitin-protein ligase UPL5 isoform A 657 739 - -
Dere02g3360 920 SUPERFAMILY Ubiquitin-like 107 194 IPR029071 -
Dere02g3360 920 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 107 895 - -
Dere02g3360 920 Gene3D Hect, E3 ligase catalytic domains 539 768 - -
Dere02g3360 920 Gene3D - 99 205 - -
Dere02g3360 920 SUPERFAMILY Hect, E3 ligase catalytic domain 533 884 IPR035983 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g3360 Dere-ChrDere02 42671190 42678758 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g3360 106 180 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 38.667 5.68e-11 59.3