Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g3353 ATGACTGTGCTGTTAATGGAAATGGAACTTTGCAAACTTTTCATTGGCGGGATTTCCTGGGACACAAGTGAAGACCGACTCAGACAGTATTTCCAGAATTTTGGAGATGTTGTGGAAGCTTTGATAATGAAGGATCGGACCACCGGGCGTGCCCGTGGTTTTGGATTTATTGTTTTTTCTGACCCTTCTGTTGCTGATCGAGTTGTTATGGAAAGGCATGTCATAGATGGTAGAACTGTTGAAGCGAAAAAGGCTCTCCCTAGGGATGATCAGAACATTCTGAACAGAATCAACAACAGCATTCATGGGTCACCTGGTCCTACTCGCACAAGGAAGATATTTGTGGGAGGTCTAGCATCCACAGTGACTGAGAGTGACTTTAAGAAGTACTTTGATCAATTTGGAACTATTACAGATGTTGTGGTGATGTATGACCATAACACCCAAAGGCCAAGAGGTTTCGGATTCATCACCTACGATTCTGAGGAAGCAGTGGAGAAAGTTCTGTGCAAAAGTTTTCATGAACTGAATGGTAAAGTGGTCGAGGCTAAGCGTGCTGTTCCAAGGGATATATCTTCAGGCCCAAGTAGAAGCCAATTAGCTGGATATAACTATGGCCTAAGTAAAGTTAGTAGCATTTTTAATGGTTCAATTCAGGGATATAATCCAAGCTTGGTCGGAGGTCATGGACTTAGGACAGATGGCATATCTAGTCCTGTTACTGTTGGTAGGAGTGGATATACTTCTTTTAGTCCTAGTTATGGGACAGGACTCACTTTTGATCCAGGACTGAGTTTAAATGGAAAAACAAACTTTACATCTACCATCGTCTTGGGACAGGAATTAAACCCTTCGTATAATGGAAGTCCAAGCAGGTATAATAATGCCTTGGGGTATGTTAGCAAAAATGGAGCCAACAGTTCAACCATAAGTTCAGCAAATAAAAATTGGGGGAATGGTAGTTTTAACTATGCTACTAACCTTACAAGCTCCGACGCATTTGATAGATTCAGTAGTGAAAATCCAAGCATGGGTTCTTTTGGTAGTACCAGAGCACTTTGGAGTTCCTCCCCTAGTACCAATCAAGCTGGAACTATTGGCTCTGGCTATGGTAAGAGTAGTCTTAGCTATGGTTCTGGAGACATAATTTTTGGCTCGAAGGCAGTAGGTCGTGGAAAAAGTAGTGAAATTACTGCTGCATCAGGGTCATCATATGCTTTACCAAATGGAAGTTATGGTGGAGCATATAAAGATATTTTTGATGCTGGGCCATTTTACAGCAACCAAAGTTTGAGATCATCACGTTTAGAACTAGAGGATTCTGGTTCTCTTGGTTTTGGTCTTAGATATGCTGTTTCAGATTTAATGAGCAAAGGTTCTGGTCGCTATATTGGGCCTTCTGGACAGTCAGATCGAGGAGTTGCTGCCTAG 1431 0.42 MTVLLMEMELCKLFIGGISWDTSEDRLRQYFQNFGDVVEALIMKDRTTGRARGFGFIVFSDPSVADRVVMERHVIDGRTVEAKKALPRDDQNILNRINNSIHGSPGPTRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLCKSFHELNGKVVEAKRAVPRDISSGPSRSQLAGYNYGLSKVSSIFNGSIQGYNPSLVGGHGLRTDGISSPVTVGRSGYTSFSPSYGTGLTFDPGLSLNGKTNFTSTIVLGQELNPSYNGSPSRYNNALGYVSKNGANSSTISSANKNWGNGSFNYATNLTSSDAFDRFSSENPSMGSFGSTRALWSSSPSTNQAGTIGSGYGKSSLSYGSGDIIFGSKAVGRGKSSEITAASGSSYALPNGSYGGAYKDIFDAGPFYSNQSLRSSRLELEDSGSLGFGLRYAVSDLMSKGSGRYIGPSGQSDRGVAA 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g3353 476 Gene3D - 108 196 IPR012677 -
Dere02g3353 476 SUPERFAMILY RNA-binding domain, RBD 104 205 IPR035979 GO:0003676
Dere02g3353 476 FunFam Heterogeneous nuclear ribonucleoprotein 1 10 92 - -
Dere02g3353 476 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 7 467 - -
Dere02g3353 476 CDD RRM2_Hrp1p 112 189 - -
Dere02g3353 476 CDD RRM1_hnRNPA_hnRNPD_like 13 83 - -
Dere02g3353 476 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 179 IPR000504 GO:0003723
Dere02g3353 476 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 13 78 IPR000504 GO:0003723
Dere02g3353 476 FunFam Heterogeneous nuclear ribonucleoprotein 1 108 195 - -
Dere02g3353 476 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 194 IPR000504 GO:0003723
Dere02g3353 476 SMART rrm1_1 12 83 IPR000504 GO:0003723
Dere02g3353 476 SMART rrm1_1 112 184 IPR000504 GO:0003723
Dere02g3353 476 Gene3D - 9 93 IPR012677 -
Dere02g3353 476 SUPERFAMILY RNA-binding domain, RBD 9 102 IPR035979 GO:0003676
Dere02g3353 476 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 11 87 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g3353 Dere-ChrDere02 42537015 42539722 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g3353 13 174 Eukaryotic Initiation Factors Gene Family AT2G36660 29.825 9.58e-15 74.7