Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g3333 ATGGGTCGCTCTCGTGGGAATTTTCATGCTGATGAGGACCCCAGCCAAAGGTCCAGGAGAAAAAAGAATGCTGCCAGTGGAGAAACTTTAGAATCTGGAGCTGCAGGTCAAGGAACAAGTGAAGGGAAAAGGGCTTTGTACCACTGCAATTATTGTAACAAAGATATTACAGGAAAAATTCGTATCAAGTGTGCCATGTGTCCAGATTTTGACCTTTGCATAGAGTGTTTTTCAGTTGGAGCTGAGGTGACTCCACATAAAAGCAATCATCCTTACAGGGTTATGGACAATTTAACTTTCCCTCTTATATGCCCGGACTGGAATGCAGATGATGAAATCCTGCTTTTAGAGGGAATTGAAATGTATGGCTTGGGGAACTGGGCTGAAGTTGCTGAGCATGTAGGGACAAAGAACAAAGAAGCATGCATAGAACACTATAGGAATGTCTACCTGAACTCCCCATTCTTTCCTCTTCCAGACATGTCTCATGTTATTGGAAAAAATAGAAAGGAGCTTCTTGCTATGGCAAAAGGGCAGGGTGATGACAAGAAAGGGATCTCTGGGGAGTTTAGTTTAAAAGCAGAATCTCGATTTTCTCCATCTAGGGTCAAAGTTGAAGATTCCCATAAAGCTGGTCCCTCTGGCCGTTTATTATCTGGCTTAAATCCAGAAGTAGAATCTGGCACCTCTGGTGGCACACATACTGCTGCACCTGCTAATCAGAAGGCTTCCAATGCATCCTGGGGCAAAGATGGTCCTGAAGTAATTAAAGTGGAAGATGATCAGAATTTTGGAGGAAATAAGTCAAGTTCCTCAGGCAGTGAAGGTCATTCTTTAGTACAGTTGAGTGGTTATAACTCTAAACGAAAGGAATTTGATCCTGAATATGATAATGATGCTGAACAACTACTCGCTGAAATGGAATTCAAGGAGACTGACACTGACGATGAACGAGAACTGAAACTTCGTGTGATACATATATTTTTAAAAAGGCTTGATGAAAGAAAACGTAGGAAAGATTTTGTACTTGAAAGAAACTTGTTATACACAAATCCTTTCGAGAAGAATTTATTGCCTGAAGAGAGAGCAATATGTCGGAGATATGATGTATACATGCGCTTTCATGCAAAAGAAGATCACGAGGAAATGCTTAGAACAATTATAAACACGCATAGAACTTCTAAAAGACTTCAAGAGCTTAAGGAAGCCCAGGCTGCTGGTTGCCGTTCGTCTGCTGAAGCAGATAGGTATCTAGAACAGAAGCACAGAAGGGAAGCCGAAGAAAATGCACGTAAAGCAAAAGAAAGTGCTCAGGTTCCGAATGCTTTCATGGATTCAACTGCAGGATCTGCAGGGCCTGCTGCTTCCAGCTCTGTCAATGAAATTGATGTTACAGGATACTATGGCGCAGATTTACTTTCTGAAAGTGAGAAACGTTTATGCTGTGAGTTAAGGTTGCCTCCAGTTGCATATCTGAAGATGCAACAGATTTTGGCTGTACAAGTATTCTGTGGCAATGTCACTGCAAAATCTGATGCCCATCACTTGTTCAGACTGGAAACAAGCAAAATCGACAGAGTCTATGATATGCTTGTGAAAAAGGGAATTGCTCCACCCTGA 1620 0.4179 MGRSRGNFHADEDPSQRSRRKKNAASGETLESGAAGQGTSEGKRALYHCNYCNKDITGKIRIKCAMCPDFDLCIECFSVGAEVTPHKSNHPYRVMDNLTFPLICPDWNADDEILLLEGIEMYGLGNWAEVAEHVGTKNKEACIEHYRNVYLNSPFFPLPDMSHVIGKNRKELLAMAKGQGDDKKGISGEFSLKAESRFSPSRVKVEDSHKAGPSGRLLSGLNPEVESGTSGGTHTAAPANQKASNASWGKDGPEVIKVEDDQNFGGNKSSSSGSEGHSLVQLSGYNSKRKEFDPEYDNDAEQLLAEMEFKETDTDDERELKLRVIHIFLKRLDERKRRKDFVLERNLLYTNPFEKNLLPEERAICRRYDVYMRFHAKEDHEEMLRTIINTHRTSKRLQELKEAQAAGCRSSAEADRYLEQKHRREAEENARKAKESAQVPNAFMDSTAGSAGPAASSSVNEIDVTGYYGADLLSESEKRLCCELRLPPVAYLKMQQILAVQVFCGNVTAKSDAHHLFRLETSKIDRVYDMLVKKGIAPP 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g3333 539 Pfam Zinc finger, ZZ type 46 87 IPR000433 GO:0008270
Dere02g3333 539 ProSitePatterns Zinc finger ZZ-type signature. 49 76 IPR000433 GO:0008270
Dere02g3333 539 SMART zz_5 43 88 IPR000433 GO:0008270
Dere02g3333 539 SUPERFAMILY RING/U-box 47 110 - -
Dere02g3333 539 SUPERFAMILY Homeodomain-like 101 153 IPR009057 -
Dere02g3333 539 MobiDBLite consensus disorder prediction 263 279 - -
Dere02g3333 539 FunFam Transcriptional adapter 2 454 538 - -
Dere02g3333 539 FunFam Transcriptional adapter 40 95 - -
Dere02g3333 539 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 107 154 IPR017930 -
Dere02g3333 539 MobiDBLite consensus disorder prediction 223 247 - -
Dere02g3333 539 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 47 534 - -
Dere02g3333 539 Pfam Myb-like DNA-binding domain 106 149 IPR001005 -
Dere02g3333 539 Gene3D - 38 95 IPR043145 -
Dere02g3333 539 SUPERFAMILY Homeodomain-like 444 536 IPR009057 -
Dere02g3333 539 Gene3D - 101 152 - -
Dere02g3333 539 MobiDBLite consensus disorder prediction 198 279 - -
Dere02g3333 539 Gene3D - 454 537 IPR036388 -
Dere02g3333 539 ProSiteProfiles SWIRM domain profile. 453 539 IPR007526 GO:0005515
Dere02g3333 539 ProSiteProfiles Zinc finger ZZ-type profile. 44 100 IPR000433 GO:0008270
Dere02g3333 539 ProSiteProfiles Myb-like domain profile. 107 150 IPR001005 -
Dere02g3333 539 ProSiteProfiles SANT domain profile. 102 154 IPR017884 -
Dere02g3333 539 MobiDBLite consensus disorder prediction 1 26 - -
Dere02g3333 539 FunFam Transcriptional adapter 2 100 152 - -
Dere02g3333 539 CDD SANT 107 149 IPR001005 -
Dere02g3333 539 PIRSF Txn_adaptor_ADA2 34 538 IPR016827 GO:0003713|GO:0006357|GO:0035065
Dere02g3333 539 SMART sant 103 152 IPR001005 -
Dere02g3333 539 CDD ZZ_ADA2 47 95 IPR041983 -
Dere02g3333 539 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g3333 Dere-ChrDere02 41866305 41871371 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g3333 1 537 EF-hand Containing Proteins AT3G07740 43.433 3.28e-150 440
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Dere02g3333 Myb_DNA-binding 2.7e-11 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere02g3333 02 41866305 41871371 Dere02g3333 02 41866305 41871371 ECH