Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g3329 ATGCAGCCCCATCTGGCCTACTTCTGGCCCCTCGTTGCTTCCACGACTGTGTTCATTGTCTCAATAATGGCTTTTGGAGGGTTTTCAGAACCCTTAGAAGCTCAGGGTGAAGAAGCAGGTAAGGATTTTGCTCATGTGCTACTTCTAAGCATGGCAATTAAGTGCCTATATTCTTTAATTTCTTCATGCCTTTTCTCATTCACTCTCGGCCTTCGTCGCTCCTCTCTAGCATACACAGAGGTTTATAGTAACTTGAGCATATTGCCCATAACTTTCAATTGGAATATAAATACTCCAAAATCAAGTGAATTGATGACGTCCATGCTGTCCAAAAACCTATGGATTCGACGGCAACAATGCCCTTGTGGAGATTGGAAATGTTATATAACTTATGAAGGCGATGCTGAGGAGAGTTCAGCAGGACCGGAATTGGTGAAGACAGAGAAGGCATCATCAGAAGCTATGGTTTCGCCCTATGTAGGAATGGTGTTTAAGAGTGATGATGATGCATTTGAGTATTATGGGAATTTTGCCCGGAAGAATGGGTTCTCGATTAGGAAGGAAAGATCCAGACTTAGCCCGCAGTTGGGCATTTATAAACGTGACTTTGTTTGTTACCGATCCGGGTTTGCCCCAGTGAAGAAAAAGTCTAATGGAGAACATCACAGAGATAGGAAATCGGTGCGGTGTGGATGCGATGCAAAAATGTATCTGTCCAAGGAGATAGTAGATGGAGTTTCGCACTGGTTTGTTGTGCAGTTTAGTAATGTACATAATCATGAACTTTTGGAAGATGACCAGGTGCGGCTTCTTCCGGCGTATCGTAAGATTCAAGAGGCTGATCAAGAGCGTATACTCTTGCTTTCCAAAGCTGGGTTTCCGATACATCGGATAGTGAAGATGCTTGAACTGGAAAAAGGGATTCAGGGTGGACAATTGCCTTTCCTGGAAAGGGATGTGAGAAATTTTGTTCAAAACCGTAAGAAGGTTGTTCAGGAAAATGAGGCATTGCTCAGCGAGAAAAGAGAAAATGATACATTGGAACTTCTTGAGGCATGCAAAGCCATGAAGGAGACAGATGATGACTTTGTTTATGATTTTACAGTGGATGAGAATGAAAAGGTTGAAAATATTGCTTGGTCATACAGTGACTCTATTCATGCATATGCTATGTTTGGCGATGTGGTTTACTTTGACACTAGTTATCGATCAATTACATATGGATTGCTCTTTGGAGCATGGTTTGGTATTGACAACTATGGTAGAACCATTTTCTTTGGTTGTGTTTTATTGCAGGACGAAACACCCCGTTCCTTCTCTTGGGCATTACAGACTTTTGTCCGATTCATGAGAGGAAGATGTCCACAAACAGTTTTAACGGATGTTGACCCTGGGCTTACAGATGCCATAAGGAGCGAATTGCCAGGCACCAAACATGTCATTTCTATATGGAATATTATGCCCAAGGTGCCCAGTTGGTTTTCTCTTCCACTTGGATCTCGCTATGAAGAATTTAAATCTGAGTTTGATGCATTATATCACATTGAGAATACAGAGGAATTTGAACTTCGATGGAACCAAATGATATCTGCGTTTGGTCTTGGTTCAGATAAGCATACTGGTCTACTGTATTCTATGCGGGCATCTTGGGCACTATCTTATGTTAGGGGTTTCTTTCTGGCTCGGATGGCGACTACATCTTACTCAAAGTCGTTAGATGGATTCATAAAAGGGATCTTCAGTGCACAAACATGTTTGCGTAGCTTTTTTGAGCAGGTTGGCATTTCTGCAAATTTTCATCATCATGCTCGGCATGAGACTCAATGCATACACCTTAAAAGCTGCATACCCATTGAAGAGCATGCTCGGAGTATCTACACTCCTTTTGCGTTTAATGCCTTGCAACAAGAGTTATTGCTGGCAATGCAATATGCTACATCTGAAATGGCCAATGGGTCCTATATTGTTCGCCACTTCAAAAGAATGGATGGTGAACGTCTTGTGATATGGATAGCTGACGATGAACAAATCCATTGCTCTTGCAAGGAATTTGAATCTTCAGGGATTTTATGCAGACATGCTCTTCGTGTATTTGTAATAAAGAATTACTTTCAGCTCCCTGACAAGTATTTTTTAAATAGATGGCGACAACAGGAATCCTCATTGCTTCTTGACGATGATCATAATAATAATCACAATATTGATGATGAATGGTTTCAAGAATATCAGTCCCTTGCCGAAACTTTGTTTGCAGAATCGTCAGTTACAAAGGAGCGATCTGACTATGTTCGTCAGGAACTGACAAAAGAAATTACTAGGATTCTTAAAGAGGTTAGAAATCTGCCCGAGACTGATGGAGCCACAATGGACTTGACTGTTTCACCAAACATGCCTGCAGCTGTATGTTCTCCTGGACGTGTAATCAGAGTTGATTATGGAGGCATGTTTTCTTTGTATTACTCTGTTGGATTTGTCGTTTCGAGTGGACCGACATTTTCTTTACGAGGTCGAAAATGTGTGTATGGCGAGGAGGGTCGCAATCTGAGTGTTGTTTTGAATGCATTAAAATGGAAACACCTGGAAAGTTTGTGTCTCCAAGATTTGGGGTAG 2610 0.4153 MQPHLAYFWPLVASTTVFIVSIMAFGGFSEPLEAQGEEAGKDFAHVLLLSMAIKCLYSLISSCLFSFTLGLRRSSLAYTEVYSNLSILPITFNWNINTPKSSELMTSMLSKNLWIRRQQCPCGDWKCYITYEGDAEESSAGPELVKTEKASSEAMVSPYVGMVFKSDDDAFEYYGNFARKNGFSIRKERSRLSPQLGIYKRDFVCYRSGFAPVKKKSNGEHHRDRKSVRCGCDAKMYLSKEIVDGVSHWFVVQFSNVHNHELLEDDQVRLLPAYRKIQEADQERILLLSKAGFPIHRIVKMLELEKGIQGGQLPFLERDVRNFVQNRKKVVQENEALLSEKRENDTLELLEACKAMKETDDDFVYDFTVDENEKVENIAWSYSDSIHAYAMFGDVVYFDTSYRSITYGLLFGAWFGIDNYGRTIFFGCVLLQDETPRSFSWALQTFVRFMRGRCPQTVLTDVDPGLTDAIRSELPGTKHVISIWNIMPKVPSWFSLPLGSRYEEFKSEFDALYHIENTEEFELRWNQMISAFGLGSDKHTGLLYSMRASWALSYVRGFFLARMATTSYSKSLDGFIKGIFSAQTCLRSFFEQVGISANFHHHARHETQCIHLKSCIPIEEHARSIYTPFAFNALQQELLLAMQYATSEMANGSYIVRHFKRMDGERLVIWIADDEQIHCSCKEFESSGILCRHALRVFVIKNYFQLPDKYFLNRWRQQESSLLLDDDHNNNHNIDDEWFQEYQSLAETLFAESSVTKERSDYVRQELTKEITRILKEVRNLPETDGATMDLTVSPNMPAAVCSPGRVIRVDYGGMFSLYYSVGFVVSSGPTFSLRGRKCVYGEEGRNLSVVLNALKWKHLESLCLQDLG 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g3329 869 SMART 26again6 677 704 IPR006564 GO:0008270
Dere02g3329 869 Pfam SWIM zinc finger 671 698 IPR007527 GO:0008270
Dere02g3329 869 ProSiteProfiles Zinc finger SWIM-type profile. 667 702 IPR007527 GO:0008270
Dere02g3329 869 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 150 768 IPR031052 GO:0006355
Dere02g3329 869 Pfam FAR1 DNA-binding domain 172 263 IPR004330 -
Dere02g3329 869 Pfam MULE transposase domain 395 487 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g3329 Dere-ChrDere02 41819621 41827269 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Dere02g3329 MULE 6.8e-15 CL0219