Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g3319 ATGGGAGAATCAGACGAGGAGTACTCAGGAGGTCAAAGGGCGAACACAAGCTTGAACACCAACGTTAACGACTTGTCTCCATCATCGGGTTGCAGAGAGCAAGACAGGTACCTTCCCATAGCGAACGTGAGCAGAATCATGAAGAAGGCTTTGCCTCCCAACGCCAAGATCTCCAAGGAAGCCAAAGAGACCGTTCAGGAGTGCGTCTCTGAGTTCATCAGCTTCATCACCGGTGAAGCCTCCGACAAGTGCCAGAAGGAGAAGCGCAAGACCATCAACGGCGACGATCTGCTCTGGGCCATGACCACCCTCGGCTTCGAGGACTACGTCGACCCCTTGAAGCTCTACCTTCAGAAGTATAGAGAGATGGAGGGAGACAAGACGGCCATGCTGGCGGCACATCAGGGTGGCGGCGGTGATCAGAGGGAAGTGATTGGTGGTGGCGGTGACGGCGGCGTTTATGGGCATCATGGTGGGGCGATGATGATGATGATGGGTCATCACCATCGTCATCAAGGGCACATGTAG 528 0.5492 MGESDEEYSGGQRANTSLNTNVNDLSPSSGCREQDRYLPIANVSRIMKKALPPNAKISKEAKETVQECVSEFISFITGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVDPLKLYLQKYREMEGDKTAMLAAHQGGGGDQREVIGGGGDGGVYGHHGGAMMMMMGHHHRHQGHM 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g3319 175 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 12 134 IPR027113 GO:0001228|GO:0006355|GO:0016602
Dere02g3319 175 MobiDBLite consensus disorder prediction 1 31 - -
Dere02g3319 175 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 37 101 IPR003958 -
Dere02g3319 175 FunFam Nuclear transcription factor Y subunit B-3 26 145 - -
Dere02g3319 175 ProSitePatterns NF-YB/HAP3 subunit signature. 68 84 IPR003956 GO:0005634|GO:0006355|GO:0043565
Dere02g3319 175 MobiDBLite consensus disorder prediction 9 30 - -
Dere02g3319 175 Gene3D Histone, subunit A 26 145 IPR009072 GO:0046982
Dere02g3319 175 PRINTS CCAAT-binding transcription factor subunit A signature 103 121 - -
Dere02g3319 175 PRINTS CCAAT-binding transcription factor subunit A signature 65 83 - -
Dere02g3319 175 PRINTS CCAAT-binding transcription factor subunit A signature 84 102 - -
Dere02g3319 175 SUPERFAMILY Histone-fold 34 144 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g3319 Dere-ChrDere02 41686344 41686871 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g3319 28 171 CCAAT-HAP3 Transcription Factor Family AT4G14540 70.833 4.62e-67 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Dere02g3319 CBFD_NFYB_HMF 1.5e-27 CL0012