Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g3317 ATGGAAGTCTTCGCCGGCGAGGACTTTCCTGACCAAGTGGCCCCATTTCTCGAGTCCAATGACTTCCTATGTGCTCAGCCAATGGATCTGGTTCACACTCCGGAGGTCATCGCTGACTATCGGAGCCCTCGGCCGCCGCCACAGAAGCTCCGCCCCATCAGGTACCATGGAAGGTCTCCGCCGTGTGTCGATGATGGAGAGTCAAGTCAGAAGCTTCAGTCTTTGGAGCAGCAAGTCGAAGCTAACGAGGCTATAGGAAACGATAGCCTTCAAATGGAGGACCCGGTTGAGGCCGGGTCAGGTCTCGACGCGGGTATTTGGGACCCGAGCTCCGAGAGATGCATGTTGGAGCAGGAATCTGGCTCATCTTCAGATGATGATGACAGTGCATCTGGAAGTACAAAAGAACTTGTCAGTGGAAAGAGAAGGAAAAGGATGACTAAAAAGCTTGAAGAATTTTTTGAAAGTTTGGTGATGAAAGTAATGGAAAAGCAAGAGCAGTTGCATAAACAATTAGTGGATTTGATTGAAATGAAGGAAAGGGAAAGGGTAATGAGAGAAGAAGCTTGGAAGCAGAAGGAGATGGAAAGGATTAAAAGAGATGAGGAGGCCAGAATCCAAGAAAAATCTCGAAATTTAGAACTCATATCGATTATTCAAAATTTACTGGGCCATGAAATTCCAATCACCCAACCAGCAGTAAGCTGCTTAAGATCAGACAATGAAGCTGAGGCAAACATTGGACAAGATTCTAGGGGTGATTTGAGTAACAATAGATGGCCAGAAGCTGAGGTACAAGCTCTCATAACTCTAAGAACTTCCTTAGATCATAAGTTTCATATGGGATTGAAAGGATCTATTTGGGAGGAGATATCTGAGGCAATGCATAATTTGGGCTACAACCGTTCTGCAAGGAAGTGTAAGGAGAAGTGGGAGAACATCAATAAGTACTATAAAAGGACAATCAGCAGTGGAAAGAAGCGAAGTCTGAACAGTAGAACATGTCCTTACTTTGATGAGTTGGATATTCTGTACAGAAATGGACTCTTGAACGTGGGAAATGCCTTAAGCAATACCAAAAATGTTGCCAGGATTGAAGAGGAGCAAAGTGAGAGTTGA 1119 0.4477 MEVFAGEDFPDQVAPFLESNDFLCAQPMDLVHTPEVIADYRSPRPPPQKLRPIRYHGRSPPCVDDGESSQKLQSLEQQVEANEAIGNDSLQMEDPVEAGSGLDAGIWDPSSERCMLEQESGSSSDDDDSASGSTKELVSGKRRKRMTKKLEEFFESLVMKVMEKQEQLHKQLVDLIEMKERERVMREEAWKQKEMERIKRDEEARIQEKSRNLELISIIQNLLGHEIPITQPAVSCLRSDNEAEANIGQDSRGDLSNNRWPEAEVQALITLRTSLDHKFHMGLKGSIWEEISEAMHNLGYNRSARKCKEKWENINKYYKRTISSGKKRSLNSRTCPYFDELDILYRNGLLNVGNALSNTKNVARIEEEQSES 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g3317 372 Coils Coil 162 182 - -
Dere02g3317 372 FunFam Trihelix transcription factor GT-2 260 320 - -
Dere02g3317 372 Coils Coil 192 212 - -
Dere02g3317 372 Gene3D - 260 320 - -
Dere02g3317 372 CDD GT1 258 321 - -
Dere02g3317 372 ProSiteProfiles Myb-like domain profile. 252 315 IPR001005 -
Dere02g3317 372 PANTHER FI21293P1 94 361 - -
Dere02g3317 372 MobiDBLite consensus disorder prediction 36 142 - -
Dere02g3317 372 Pfam Myb/SANT-like DNA-binding domain 258 342 IPR044822 -
Dere02g3317 372 MobiDBLite consensus disorder prediction 66 85 - -
Dere02g3317 372 SMART sant 256 317 IPR001005 -
Dere02g3317 372 SUPERFAMILY Homeodomain-like 256 317 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g3317 Dere-ChrDere02 41667210 41669044 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g3317 135 347 Trihelix Transcription Factor Family AT5G47660 43.231 4.13e-52 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Dere02g3317 Myb_DNA-bind_4 4.4e-22 CL0123