Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g3308 ATGACGTCTCACGTGACCCTTGAAGCAACCTCCACCTGCCAAAACCTTCTTCTTCGTTCATTATTCCTTCTTGGCGTAGCAGCAATGGAACGTGGAGGCTTTCATGGGTACCGCAAGCTCCCCAGCACAACCTCTCCAGTTCTTAACACAATGACAGGGTTGAAGCTATCTTCAGTGTCGGAGACGATGAACATGAGGCAGCAGCTAGCAGCAGATAACAACCATGGCCACTCATCAGCAGGAGCAGATGACACCGATTGCACAGTGAGGGAGCAAGACAGGTTCATGCCGATCGCTAATGTGATCAGGATCATGCGCAAGATCCTACCGCCACATGCCAAGATCTCCGACGACGCGAAGGAGACGATCCAGGAGTGCGTGTCGGAGTATATCAGCTTCATCACCGGCGAGGCGAACGAGCGGTGCCAGAGGGAGCAGCGGAAGACGATCACCGCCGAGGACGTCCTCTGGGCGATGAGCAAGCTCGGGTTCGACGACTACATCGAGCCCTTGACCATGTACCTGCACCGGTACCGGGAGATGGAGGGCGACCGGGGCTCCATGCGAGGCGAGCCGCTGGGGAAGAGGACGGTGGAGCCGCCGTATGGGGCTGCGGCGTTGGGGGCCTTTGTCCCGCCGTTTCACATTGGGCATCCGAATGGATATTTCGGTGCAGCAGCAGCAGCAGCCATGGGAGGGTACATGAGGGAGCATGCACAGAGTAATGCAGGAGGAGGGCCGTCTCAAGCTGAACCAAATGGCCAATACAAGTGA 774 0.5724 MTSHVTLEATSTCQNLLLRSLFLLGVAAMERGGFHGYRKLPSTTSPVLNTMTGLKLSSVSETMNMRQQLAADNNHGHSSAGADDTDCTVREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTMYLHRYREMEGDRGSMRGEPLGKRTVEPPYGAAALGAFVPPFHIGHPNGYFGAAAAAAMGGYMREHAQSNAGGGPSQAEPNGQYK 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g3308 257 PRINTS CCAAT-binding transcription factor subunit A signature 161 179 - -
Dere02g3308 257 PRINTS CCAAT-binding transcription factor subunit A signature 142 160 - -
Dere02g3308 257 PRINTS CCAAT-binding transcription factor subunit A signature 123 141 - -
Dere02g3308 257 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 68 226 IPR027113 GO:0001228|GO:0006355|GO:0016602
Dere02g3308 257 MobiDBLite consensus disorder prediction 242 257 - -
Dere02g3308 257 SUPERFAMILY Histone-fold 92 191 IPR009072 GO:0046982
Dere02g3308 257 MobiDBLite consensus disorder prediction 238 257 - -
Dere02g3308 257 FunFam Nuclear transcription factor Y subunit B-6 84 199 - -
Dere02g3308 257 Gene3D Histone, subunit A 83 198 IPR009072 GO:0046982
Dere02g3308 257 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 95 159 IPR003958 -
Dere02g3308 257 ProSitePatterns NF-YB/HAP3 subunit signature. 126 142 IPR003956 GO:0005634|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g3308 Dere-ChrDere02 41526877 41529906 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g3308 29 222 CCAAT-HAP3 Transcription Factor Family AT5G47670 60.096 6.16e-76 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Dere02g3308 CBFD_NFYB_HMF 8.3e-26 CL0012