LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere02g3301	ATGGACTCAAAATCTAGTGCTAGACCTCCCTCAAAACAGCATCACAAAACAGCTTCTATACAAAAAGTAGAGGCAAAAGACGTCAGCCCTTCTCCACCTGTGGTTCCAAAAATAGGCAAACGTGAACTGGTTGCTCCTGAAAGTTCATCAAAATCTGTGGAAAACTCATCAAAGCAGACTACTGTAGAAACTGCTGAAAACAAGAAGTTCGGAATTTTGAACCAGAAGGGACCTGCGGATTCCTTGATCAATAAAGGTGGTTCTGGTGCTTCCTCATCTGTTCTTGAGCAAGCATCTGGAGAAGTTGACCATGCTAATAATGAAAATAGAGGTTCGCAGGATAGCTCTATTGATCAAGAAAAGAAGACATCAGAGTATGGTAGTGTGAAGAACTGTTCTGTTTCAGCTAAAGTTAGTGATGGGGCAGGCAGTTTTGGAAAATCCAGTGTAAGTGCCAAGATCAGTGACCGAGCTGATTATGTTGAGAGTGGTAAGAGCAGCATCTGCAGAGGAAGCACAAGCAGTGATGTCAGTGATGAGAGCACCTGTAGCAGCTTTAGTAGCAGCATAAACAAACCTCACAAGGCAAATGACTTGAGATGGGAAGCCATCCAAGCTGTCCGAGCTAAAGATGGAGTGCTGGGTTTGGGTCATTTTAGACTACTTAAGAGGTTGGGCTGTGGGGATATTGGGAGTGTGTACCTCTCTGAGTTGAGTGGAACTAAATGCTATTTTGCAATGAAGGTAATGGACAAAGCATCCCTAGCCAGTCGTAAGAAGCTGCTTCGTGCTCAGACTGAAAGGGAAATACTGCAGTCACTGGACCATCCCTTTCTCCCGTCACTTTATACCCATTTTGAGACAGAAAAGTTCTCCTGCTTGGTAATGGAATTCTGCCCTGGTGGGGACTTGCACACACTTAGGCAGAAGCAGCCAGGGAAGCATTTTCCTGAGCAAGCAGTAAAATTTTATGTGGCAGAGGTCTTGCTAGCTTTGGAATACCTCCACATGCTTGGAATTGTCTATCGTGACCTGAAGCCAGAAAATGTCCTTGTGAGGGATGATGGACATATTATGCTCTCTGACTTTGATCTGTCTCTTCGTTGTGCTGTTAGTCCAACTCTCGTTAAAACCTCATCAACAGAATCTGAGCCTTTAAGAAAGAATCCAGTTTATTGCGTGCAGCCAGCTTGTATTGAGCCACCTTCCTGCATCCAGCCATCTTGTGTTGCTCCCACAACATGCTTTTCTCCCCGGCTCTTTTCTAGCAAATCAAAGAAGGACCGGAAAACAAAGACTGAAATTGGAAACCAGGTAAGTCCTTTACCTGAGCTCATTGCGGAGCCTACTGATGCTCGATCTATGTCATTTGTTGGAACCCATGAATATTTGGCCCCTGAGATTATAAAGGGCGAGGGTCATGGAAGTGCGGTTGATTGGTGGACTTTTGGGATCTTTCTATATGAGCTGTTGTTCGGTAAAACTCCTTTTAAGGGGTCTGGGAACCGAGCTACATTGTTTAATGTTGTTGGCCAGCCTCTTCGATTTCCAGAATTGCCTGTTGTGAGTTTTGCAGCAAGGGATCTTATAAGGGGTTTGCTTGTGAAGGAACCACAACACAGATTGGCATATAAACGAGGGGCTACTGAGATTAAGCAACATCCGTTTTTTGAGGGTGTGAATTGGGCATTGATCCGTTGTGCTACCCCGCCCGAGATACCAAAGCCGGTAGACTATGAGAGGGTACCTTCCCCAGCATCTTCAGGCAGTGAAAAGGTGGTTAACCATATGTCAATTCCTGATCGGAAAGGTTCCGACAATTATCTTGAATTTGATTTCTTCTAG	1845	0.4482	MDSKSSARPPSKQHHKTASIQKVEAKDVSPSPPVVPKIGKRELVAPESSSKSVENSSKQTTVETAENKKFGILNQKGPADSLINKGGSGASSSVLEQASGEVDHANNENRGSQDSSIDQEKKTSEYGSVKNCSVSAKVSDGAGSFGKSSVSAKISDRADYVESGKSSICRGSTSSDVSDESTCSSFSSSINKPHKANDLRWEAIQAVRAKDGVLGLGHFRLLKRLGCGDIGSVYLSELSGTKCYFAMKVMDKASLASRKKLLRAQTEREILQSLDHPFLPSLYTHFETEKFSCLVMEFCPGGDLHTLRQKQPGKHFPEQAVKFYVAEVLLALEYLHMLGIVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLVKTSSTESEPLRKNPVYCVQPACIEPPSCIQPSCVAPTTCFSPRLFSSKSKKDRKTKTEIGNQVSPLPELIAEPTDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPELPVVSFAARDLIRGLLVKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCATPPEIPKPVDYERVPSPASSGSEKVVNHMSIPDRKGSDNYLEFDFF	614

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere02g3301	614	ProSiteProfiles	Protein kinase domain profile.	219	557	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere02g3301	614	MobiDBLite	consensus disorder prediction	48	68	-	-
	Dere02g3301	614	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	340	352	IPR008271	GO:0004672\|GO:0006468
	Dere02g3301	614	FunFam	Serine/threonine-protein kinase AGC1-7	450	575	-	-
	Dere02g3301	614	CDD	STKc_phototropin_like	218	578	-	-
	Dere02g3301	614	SUPERFAMILY	Protein kinase-like (PK-like)	195	584	IPR011009	-
	Dere02g3301	614	MobiDBLite	consensus disorder prediction	1	124	-	-
	Dere02g3301	614	PANTHER	FLIPPASE KINASE 1-RELATED	54	580	-	-
	Dere02g3301	614	Gene3D	Transferase(Phosphotransferase) domain 1	451	575	-	-
	Dere02g3301	614	FunFam	Serine/threonine-protein kinase D6PK-like	217	302	-	-
	Dere02g3301	614	Gene3D	Phosphorylase Kinase; domain 1	217	302	-	-
	Dere02g3301	614	MobiDBLite	consensus disorder prediction	85	113	-	-
	Dere02g3301	614	FunFam	serine/threonine-protein kinase D6PK-like	303	370	-	-
	Dere02g3301	614	SMART	serkin_6	219	557	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere02g3301	614	Gene3D	Transferase(Phosphotransferase) domain 1	303	378	-	-
	Dere02g3301	614	Pfam	Protein kinase domain	454	557	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere02g3301	614	Pfam	Protein kinase domain	220	373	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere02g3301	Dere-ChrDere02	41436371	41439680	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere02g3301	39	614	AGC Kinase Gene Family	AT5G47750	75.606	0.0	857

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_RSK-2	Dere02g3301		Pkinase	1.8e-36	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Dere02g3301	02	41436371	41439680	Dere02g3301	02	41436371	41439680	ECH