Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g3281 ATGGGTTTCTCCGTTTTGTTCTTCTTGTTGAATGTGGAGCGGAATCCAAGAGCCTTAGCTATGCAGAGTCAGCTTGTGTGTAGTGGGTGTAGGAGCATTTTGCTTTACCCTAGAGGGGCAACTAATGTTCGTTGTGCGTTGTGTAACACTGTTACCTCTGTTCCTCCACTTGGGATGGAAATGTCTCAACTTTATTGCGGAGGCTGTAGAACATTGTTGATGTACACACGTGGAGCTGCAAGTGTCAGATGCTCCTGCTGTCACACAGTGAACCCTGCTCCAGCCCATATACGCTGTGGGAACTGCCGGACAACTCTAATGTACCCAAATGGAGCTCCATCAGTCAAATGTGCAGTTTGTCACTATATAACTGATGTCAATATGACCAATGGAAGGCTTCCAAATCCTCTCCACAGACCAAATGGAACAACCAACTCTGGAACAGTTCCTTCTACTTCTACGTCAAAGCCCCATTCTCAGAGCCAAACTGTCGTGGTAGAAAATCCTATGTCTGTTGATGCAAGTGGGAAATTGGTGACCAATGTCGTTGTTGGTGTTACATCAGAGAAAAATTGA 576 0.4566 MGFSVLFFLLNVERNPRALAMQSQLVCSGCRSILLYPRGATNVRCALCNTVTSVPPLGMEMSQLYCGGCRTLLMYTRGAASVRCSCCHTVNPAPAHIRCGNCRTTLMYPNGAPSVKCAVCHYITDVNMTNGRLPNPLHRPNGTTNSGTVPSTSTSKPHSQSQTVVVENPMSVDASGKLVTNVVVGVTSEKN 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g3281 191 PANTHER PROTEIN LSD1 21 54 IPR040319 -
Dere02g3281 191 NCBIfam zinc finger domain, LSD1 subclass 96 124 IPR005735 -
Dere02g3281 191 NCBIfam zinc finger domain, LSD1 subclass 63 91 IPR005735 -
Dere02g3281 191 NCBIfam zinc finger domain, LSD1 subclass 24 54 IPR005735 -
Dere02g3281 191 Pfam LSD1 zinc finger 66 90 IPR005735 -
Dere02g3281 191 Pfam LSD1 zinc finger 27 51 IPR005735 -
Dere02g3281 191 Pfam LSD1 zinc finger 99 123 IPR005735 -
Dere02g3281 191 MobiDBLite consensus disorder prediction 131 163 - -
Dere02g3281 191 SUPERFAMILY Multiheme cytochromes 26 121 IPR036280 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g3281 Dere-ChrDere02 40978325 40990458 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Dere02g3281 zf-LSD1 1e-12 No_clan