Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g3245 ATGGCAAGATTTGGGAGGGAGAGGGAGAGGGAGAGAGAGAGAGAGAGAGAGATTGAACTTGGGTGTGTGGGCGAAATGGTGTCAGGTTCTGGTATCTGTGCGAAGAGGGTGGTGGTGGATGCGCGCCATCACATGCTGGGACGGCTCGCTTCGATCGTGGCCAAGGAGTTGCTCAACGGCCAGAAGGTGGTCGTAGTGAGGTGCGAGGAGATATGCATCTCGGGTGGTTTGGTCCGTCAGAAGATGAAGTACATGAGGTTCCTTCGCAAGCGCATGAACACCAAGCCTTCCCATGGCCCCATCCACTTCCGTGCCCCTTCCAAGATTTTCTGGCGCACTGTCCGTGGAATGATACCGCATAAGACAAAGCGTGGGGCAGCTGCACTTGCTCGATTAAAGGTATTCGAGGGCATACCTCCTCCTTATGACAAGATGAAAAGGATGGTTGTCCCTGATGCTCTGAAGGTGTTGAGGCTTCAGAAAGGACACAAATACTGTTTGGTTGGTAAATTGTCAGCAGAAGTTGGATGGAACTATTATGATACCATTAGGGAGCTGGAAAAGAAGAGAAAAGAGAGATCACAAGTGGCTTATGAGAGGAAGAAGCAACTGAACAAATTAAGGTTGAAGGCTGAGAAGATTGCTGAGGAAAAGCTTGGATCCCAACTGAACATCCTTGATCCGGTTAAGTACTGA 696 0.4986 MARFGREREREREREREIELGCVGEMVSGSGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVFEGIPPPYDKMKRMVVPDALKVLRLQKGHKYCLVGKLSAEVGWNYYDTIRELEKKRKERSQVAYERKKQLNKLRLKAEKIAEEKLGSQLNILDPVKY 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g3245 231 FunFam 60S ribosomal protein L13a-4 33 179 - -
Dere02g3245 231 CDD Ribosomal_L13 37 138 IPR005822 GO:0003735|GO:0005840|GO:0006412
Dere02g3245 231 Hamap 50S ribosomal protein L13 [rplM]. 36 160 IPR005822 GO:0003735|GO:0005840|GO:0006412
Dere02g3245 231 ProSitePatterns Ribosomal protein L13 signature. 114 137 IPR023563 GO:0003735|GO:0005840|GO:0006412
Dere02g3245 231 NCBIfam 50S ribosomal protein L13 37 179 IPR005755 GO:0003735|GO:0006412|GO:0015934
Dere02g3245 231 Gene3D Ribosomal protein L13 33 179 IPR036899 GO:0003735|GO:0005840|GO:0006412
Dere02g3245 231 FunFam 60S ribosomal protein L13a 180 231 - -
Dere02g3245 231 Pfam Ribosomal protein L13 35 140 IPR005822 GO:0003735|GO:0005840|GO:0006412
Dere02g3245 231 Gene3D - 181 231 - -
Dere02g3245 231 SUPERFAMILY Ribosomal protein L13 37 179 IPR036899 GO:0003735|GO:0005840|GO:0006412
Dere02g3245 231 PANTHER RIBOSOMAL PROTEIN L13 26 206 IPR005822 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g3245 Dere-ChrDere02 40414170 40417773 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g3245 26 231 Cytoplasmic Ribosomal Protein Gene Family AT4G13170 89.806 5.53e-140 389