Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g3243 ATGAGACTCTCATCATCTGGTTTTAGCCCTGCACCCCAGGAAGGAGAAAAGCGAGTCCTTGATTCAGAACTTTGGCATGCATGTGCTGGCCCTCTTGTTTCTTTACCAGCAGTTGGAAGCCGCGTCGTCTACTTTCCACAAGGTCACAGTGAACAGGTTGCTGCGTCGACCAACAAGGAAGTGGATGCCCATATCCCTAATTACCCTAGCTTACCTCCGCAGCTTATATGCCAGCTTCATAATGTGACTATGCATGCGGATGCTGAGACAGATGAAGTATATGCACAGATGACCTTGCAATCTTTAAGTCCTCAGGAGCAGAAAGAGGCATACCTTCCAGTAGAGTTGGGCACTCCCAGTCAACAGCCAACAAATTACTTTTGCAAAACTTTGACAGCCAGTGACACAAGCACACATGGGGGATTCTCTGTTCCACGCCGAGCGGCTGAGAAAGTGTTTCCTCCCCTGGACTTCTCCCAACAACCTCCTGCTCAAGAGCTAGTTGCAAAGGATTTGCACGGTAATGAATGGAAATTCAGACATATTTTCAGGGGTCAACCCAAAAGGCATCTACTTACAACAGGATGGAGTGTTTTTGTGAGTGCTAAAAGGCTTGTTGCTGGTGATTCAGTTCTGTTTATCTGGAATGATAAGAACCAATTGCTTCTTGGTATCTGGCGTGCAAATCGACCACAAACTATGATGCCTTCATCAGTGTTATCTAGTGATAGCATGCACTTGGGGCTTCTTGCTGCTGCAGCTCATGCAGCTGCAACAAATAGTCGTTTTACCATTTTCTATAACCCCCGTGCTAGCCCATCTGAATTTGTTGTACCCTTAGCCAAGTATGTTAAAGCTGTGTATCATACTCGAGTCTCAGTTGGCATGCGCTTCAGGATGCTGTTTGAAACTGAGGAATCAAGTGTGCGGCGTTACATGGGCACAATAACTGGTATTAGTGACCTGGATCATGTTCGGTGGCCAAATTCACATTGGCGCTCAGTCAAGGTTGGCTGGGATGAATCCACAGCAGGAGAGAGGCAACCTAGAGTGTCTCTGTGGGAAATTGAGCCATTAACAACATTTCCTATGTATCCATCACCATTTCCTCTCAGGCTTAAGCGACCATGGCCTCCAGGACTGCCTTCTTTCCAGGGCATGAAGGATGACAGCTTGAACATAAGTAATCAGCTATTGTGGCTTCGAGACACCACAGACAGAGGGCTTCCGTCACTTAATTTCCAGGGGTTTGGGGTCAGTCCTTGGATGCATCGGAGGCTTGATCCCTCCATGTTGAATTCACCAACTGACATGTACCAAGCTATGGCTACTGCTGCAGTTCAGGATATGAGGACTTTGGATCCTTCCAAACAGCATCCTGCATCCTTTCTTCAATTTCAGCAACCACAAAACTTCCCCAACAGGACTGCTGCTTTAATGCAGGCCCAGATGTTGCAGCAGTCTCAACTGCAGCAGGCTTTTCAAAGTAATCAAGAGAATCAGCATTCTTCTCAATCTCTGGCTCCGACTCAGACACATCTTCAGCAGCAGCACTCCTTCAATAATCAGCATCATCATCATCATCAGCAGCAAGTGGTTGATCGTCAGCAGATTGCTTCTGCTATGTCTCAGTTTGTTTCTACACCTCAACCCAATTCACCGCCCATGCAAGCTATATCTTCACTGTGTCAACAGCAAAATTTTTCTGATTCAAATGTGAATCCTGTGACTTCTGCTGTAGTTTCTCCCTTGCACAGTATCTTGGGTTCATTTTCCCAGGACGAATCATCCCACCTTCTCAACCTACCTAGAACTAGCTCTTGGATACCTGTTCAAGCATCTACTACCTGGCCCTCCAAGCGTGTTGCAGTGGATCCTCTACTTTCTTCTGGAGATTCTCAGTGTGCGCTGCCTCAGTTGGAGCAGTTAGGACAGCCACAAAGTACTATGTCTCAGAATGTTATTACATTGCCACCCTTTCCTGGTAGGGAGTGTTCAATAGACCAAGAAGGAAGCACTGATCCTCAGAACAATCTTTTATTTGGTGTGAACATAGAGCCCTCATCTCTTATAGTGCAAAATGGCATGTCAAGCCTTAAGGGAGTCACCAGCAACAGTGATTCCACAGGTGGGCCATTTCAGTCGTCTAATTACCTGAATGCTACGGGAACTGATTCTTCATTGAATCATGGAATGACACATAGCATTGCTGAGTCAAATTTCCTTGAGACTCCCGATAATGCAGGTCAAGGAAACCCACAAAACAAAACCTTTGTGAAGGTTTACAAGTCAGGTTCCTTCGGAAGATCGTTGGATATCACTAAATTCAGCAGCTACCATGAGCTGCGTGGTGAACTTGCTCGTATGTTTGACCTTGAAGGCGAGTTGGAGGACCCTCTGAGATCAGGCTGGCAGCTTGTATTTGTTGACCGAGAGAATGATGTTCTTCTCCTCGGTGATGGGCCCTGGCCGGAATTCGTAAATAGTGTGTGGTTTATCAAGATCCTTTCCCCCCAAGAAGTGCAGCAAATGGGCAACAATGGGCTCGAGCTTTTGAATTCAATCCCAATTCAGAGGCTTTCTAATGGCATCTGCGATGACTATGTGAGCCATCAGGACCCAAGAAATTTAAGCACTGGGATAGCCACCAACGGTGTGACAATCTAG 2667 0.4649 MRLSSSGFSPAPQEGEKRVLDSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKEVDAHIPNYPSLPPQLICQLHNVTMHADAETDEVYAQMTLQSLSPQEQKEAYLPVELGTPSQQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELVAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNDKNQLLLGIWRANRPQTMMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVVPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDHVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFQGMKDDSLNISNQLLWLRDTTDRGLPSLNFQGFGVSPWMHRRLDPSMLNSPTDMYQAMATAAVQDMRTLDPSKQHPASFLQFQQPQNFPNRTAALMQAQMLQQSQLQQAFQSNQENQHSSQSLAPTQTHLQQQHSFNNQHHHHHQQQVVDRQQIASAMSQFVSTPQPNSPPMQAISSLCQQQNFSDSNVNPVTSAVVSPLHSILGSFSQDESSHLLNLPRTSSWIPVQASTTWPSKRVAVDPLLSSGDSQCALPQLEQLGQPQSTMSQNVITLPPFPGRECSIDQEGSTDPQNNLLFGVNIEPSSLIVQNGMSSLKGVTSNSDSTGGPFQSSNYLNATGTDSSLNHGMTHSIAESNFLETPDNAGQGNPQNKTFVKVYKSGSFGRSLDITKFSSYHELRGELARMFDLEGELEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWFIKILSPQEVQQMGNNGLELLNSIPIQRLSNGICDDYVSHQDPRNLSTGIATNGVTI 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g3243 888 SUPERFAMILY CAD & PB1 domains 752 830 - -
Dere02g3243 888 SMART B3_2 127 229 IPR003340 GO:0003677
Dere02g3243 888 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Dere02g3243 888 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Dere02g3243 888 Gene3D - 752 845 - -
Dere02g3243 888 Gene3D - 291 363 - -
Dere02g3243 888 FunFam Auxin response factor 125 229 - -
Dere02g3243 888 CDD B3_DNA 126 219 IPR003340 GO:0003677
Dere02g3243 888 FunFam Auxin response factor 291 363 - -
Dere02g3243 888 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 845 IPR044835 GO:0003677|GO:0006355|GO:0009725
Dere02g3243 888 ProSiteProfiles PB1 domain profile. 756 841 IPR000270 GO:0005515
Dere02g3243 888 Gene3D - 125 228 IPR015300 -
Dere02g3243 888 Pfam AUX/IAA family 744 841 IPR033389 -
Dere02g3243 888 MobiDBLite consensus disorder prediction 490 534 - -
Dere02g3243 888 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Dere02g3243 888 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Dere02g3243 888 MobiDBLite consensus disorder prediction 490 519 - -
Dere02g3243 888 FunFam Auxin response factor 751 845 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g3243 Dere-ChrDere02 40369408 40375781 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g3243 1 885 B3 DNA Binding Superfamily AT1G30330 68.460 0.0 1172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Dere02g3243 AUX_IAA 3.4e-07 CL0072