Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g3233 ATGGAACAGTTGAAATTGGCTCCAGAATTTCAAACCAAGGAGATATCAGCCAGATGGGATCCAGTTGAAGCATGCCGGCCTGTAATTGATGAAGCACCTGTGTTTTACCCGACAGCTGAGGAGTTTGAGGACACCCTTGGTTACATAGCAAAGATACGTCCCCAGGCTGAACCACATGGAATATGTAGGATAGTCCCTCCATCTTGCTGGGTGCCACCCTGCCCTCTTAAGGAGAAAGGTATTTGGGAAAATGCTAAATTTCCCACCCGTATTCAGCAAATTGACTTGCTTCAGAATAGAGAGCCCATGAGAAAGAAAAGTAGGGGAAGGAAACGAAAACGTAGAAAGAACTCGAAAATGGCAACATGTAGGAGACTTGCCAATCCAGATTCAGAAGCTAATGTTGCTTCTGAATCTGATGACAAATTTGGATTCCAAACAGGACCAGACTTCACTTTTAGAGAATTTCAGCAATATGCTGAGTATTTTAAAGAATGCTATTTTGGGATGAAAGATATCAAAGAGGATGGAAAAATTAGTGATAACAATTATCAGAAGATATGGAAGCCCTGTGTGGAGGAAATTGAAGGTGAATACTGGCGAATAGTTGAGCAACCAACTGATGAGGTTGAGGTGTATTACGGAGCTGACTTAGAAACTGGAGCACTTGGAAGTGGTTTTCCCAAGGCTGATTCCTTAGCTATGAGCGATTCAGATCAGTATACCCTGTCTGGCTGGAATCTGAATAACTTCCCACGACTTCCTGGTTCTGTATTATCTTTTGAAGGAAGTGATATTTCAGGGGTTCTAGTGCCTTGGCTATATGTTGGGATGTGTTTTTCATCATTTTGCTGGCATGTTGAGGATCATCACCTTTATTCACTTAATTATCTACACTGGGGTGATCCAAAAGTATGGTACGGTGTACCTGGCAGCCATGCTACAGCTTTGGAAGGTGCAATGAGGAAGCATATGCCTGATCTATTTGAGGAACAACCAAATTTACTCAATGAACTGGTTACTCAACTATCTCCTTCAATTCTGAAATCAGAGGGAGTGCCTATATTTCGCACTGTCCAGCATTCTGGGGAATTTGTTATTACCTTTCCAAGAGCATACCATGCTGGCTTCAATTGTGGATTCAACTGTGCAGAGGCTGTAAATGTTGCCCCTGTTGATTGGTTATTGCATGGCCAGAATGCTGTTGAGCTCTATAGTAAGCAGTGCCGTAAAACATCATTGTCACATGACAAGCTGTTATTAGGATCAGCTCAGCAAGCTGTACAAGCTGTTGCAGAGCTTGCTCTTGGAGGAAAGGAAACTCCAAAAAATTTGACATGGAAAAGTGTCTGCGGGAAAGACGGAGTTCTTACCAAAGCAGTTAAGACAAGGATAAAGATGGAAGAAGGGCGATTAGAGTGTCTTCCAACTCATATAAAGTTTCAGAAGATGGATATCAACTTTGATTTGGATAAGGAAAGAGAATGCTTTGCTTGCTTCTATGATTTGCACCTTTCTGCCGTAGGCTGCAAGTGCTCTCTTGACAAATATTCTTGTCTAAGACACTCAAATTTGTTTTGTTCTTGTGGAGTTGACCAAAGATTTGTTCTACTTCGTTATAATATAAATGAGCTAAAGAAGTTGGTTGAAGCATTAGAGGGAGAGTCAGAAGCTATTGCAGTGTGGACAAATAGGAACTCTGGAGTAGTTTCTTTAGATGCTGAGAATGTTTATATAGATAAGCCAGATGTGGACAGAGGCATGTGCAAAAACAAGATCTATGAAGTAGAAAGTTCATACTGTTGTGCAGGAACCAAGAAGTCAAAATTAAATGAAGGTAGTAGTCCTTGTAGTCATGTTTCTTCAGAGTTGGTCCAGTCAGAGTCTGTGGAAAGTGTACCACAGGGCACTGTAGATAGTCACAATGACAATATTAATGACAAAAATTTGGTCATGGATAACAAAGATACGGTGGAGTGGAAATGTTCAGTGGATTTGAATTTTGATGTTATGTCTGATCAAAATGAAAATTATATCCTGCATACCGCTGACAGCCATCAAAATGAAGGTACCAGTTCTGTTGAAAAAGTCTGGCACTCAGATTCCAGAAAGGAACAAGATAATGTGGTACTTGATGGTGAAGGAAATTTATCGGACGTTTTTGCTCTGGTGAAGAATGATTATCCATCATGCTCGAGGGGTGTTCACTCTTCTAGTAAATTTGATGGTGGTAAGCTGTTTGGGGGTGATCTGCCAATGCATCTTAGTATGAGAGTGCTACCTAACAGTGCATGTAAGATGGAAGTAATAGACACTTTGACTAAAAGCATGCCTGTGACAAATGAAAGCTTTCTAATTCAAAAATTTGCTACATCTGTTGAGCCTGTAAGCTTGGGCTCCATTGTGTCTGGAAAGCTGTGGTGCAGTAATCGCACAATATATCCAAAAGGATATAAGAGCAGGGTTAAGTTCTTTAGCATGCTTGATCCAAAAAGAATCTGTTGCTATGCTTCTGAAGTCCTTGATGGTGGGTTAATTGGACCTCTTTTCAAGGTTACCATGGAAGAACATCCAAGTGAGGCTTTTACGAACATCTCAGCAGAGAAGTGCTGGGAATTAGTTCTAGAGAGAGTAAATCGTGAAATCATCAGGCGCAGGGGCCTAGGGGAAGTAAAACTTCCTCCGTTGGAGCTTCTGCAAAGCATCAATGGTTTGAAAATGTTTGGATTCCTTTCCCCACCCATTATCCAGGCTATTGAAGCTCAGGATCCCCAACATCAATGCATTGAGTATTGGAATCACAAGGAATCAAACTCTTCTATATCTTCTAGCAGTGCAAGTGACAACTTGAAGTTTGTGAACTGCGGTTCAAGTAGCCCTTCATGTGATGTCAATACCAAAGTTTTTGGTATCAATTTAACAAAGCAGGATCAAAATAGCAATCAACTTATAGGAGCCAATCATCATTCATTCGAAGGGATGAAATTGATACTTGAAGGATTGTTGAAAAAAGCCAGTCCTGATGAGTTAAGCACAATGCAGAAGTTATTAGGATCTGACGCACAAAGTTCTCAGTGGAGAGTGGCACTTGCAGCTCTGATTGAGGAGATCCAGAAAAGCTTGTAG 3126 0.4101 MEQLKLAPEFQTKEISARWDPVEACRPVIDEAPVFYPTAEEFEDTLGYIAKIRPQAEPHGICRIVPPSCWVPPCPLKEKGIWENAKFPTRIQQIDLLQNREPMRKKSRGRKRKRRKNSKMATCRRLANPDSEANVASESDDKFGFQTGPDFTFREFQQYAEYFKECYFGMKDIKEDGKISDNNYQKIWKPCVEEIEGEYWRIVEQPTDEVEVYYGADLETGALGSGFPKADSLAMSDSDQYTLSGWNLNNFPRLPGSVLSFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKVWYGVPGSHATALEGAMRKHMPDLFEEQPNLLNELVTQLSPSILKSEGVPIFRTVQHSGEFVITFPRAYHAGFNCGFNCAEAVNVAPVDWLLHGQNAVELYSKQCRKTSLSHDKLLLGSAQQAVQAVAELALGGKETPKNLTWKSVCGKDGVLTKAVKTRIKMEEGRLECLPTHIKFQKMDINFDLDKERECFACFYDLHLSAVGCKCSLDKYSCLRHSNLFCSCGVDQRFVLLRYNINELKKLVEALEGESEAIAVWTNRNSGVVSLDAENVYIDKPDVDRGMCKNKIYEVESSYCCAGTKKSKLNEGSSPCSHVSSELVQSESVESVPQGTVDSHNDNINDKNLVMDNKDTVEWKCSVDLNFDVMSDQNENYILHTADSHQNEGTSSVEKVWHSDSRKEQDNVVLDGEGNLSDVFALVKNDYPSCSRGVHSSSKFDGGKLFGGDLPMHLSMRVLPNSACKMEVIDTLTKSMPVTNESFLIQKFATSVEPVSLGSIVSGKLWCSNRTIYPKGYKSRVKFFSMLDPKRICCYASEVLDGGLIGPLFKVTMEEHPSEAFTNISAEKCWELVLERVNREIIRRRGLGEVKLPPLELLQSINGLKMFGFLSPPIIQAIEAQDPQHQCIEYWNHKESNSSISSSSASDNLKFVNCGSSSPSCDVNTKVFGINLTKQDQNSNQLIGANHHSFEGMKLILEGLLKKASPDELSTMQKLLGSDAQSSQWRVALAALIEEIQKSL 1041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g3233 1041 Pfam F/Y-rich N-terminus 796 840 IPR003888 GO:0005634
Dere02g3233 1041 Pfam C5HC2 zinc finger 496 548 IPR004198 -
Dere02g3233 1041 Gene3D Cupin 17 390 - -
Dere02g3233 1041 MobiDBLite consensus disorder prediction 626 649 - -
Dere02g3233 1041 ProSiteProfiles JmjN domain profile. 32 73 IPR003349 -
Dere02g3233 1041 SMART JmjN_1 31 72 IPR003349 -
Dere02g3233 1041 SUPERFAMILY Clavaminate synthase-like 241 426 - -
Dere02g3233 1041 FunFam Putative lysine-specific demethylase JMJ16 791 929 - -
Dere02g3233 1041 Pfam jmjN domain 33 66 IPR003349 -
Dere02g3233 1041 PANTHER LYSINE-SPECIFIC DEMETHYLASE 26 703 - -
Dere02g3233 1041 SMART fyrn_3 799 843 IPR003888 GO:0005634
Dere02g3233 1041 Gene3D - 790 929 - -
Dere02g3233 1041 SMART fyrc_3 849 941 IPR003889 GO:0005634
Dere02g3233 1041 MobiDBLite consensus disorder prediction 104 121 - -
Dere02g3233 1041 MobiDBLite consensus disorder prediction 626 645 - -
Dere02g3233 1041 ProSiteProfiles FYR domain FYRC motif profile. 845 935 IPR003889 GO:0005634
Dere02g3233 1041 SMART cupin_9 240 406 IPR003347 -
Dere02g3233 1041 ProSiteProfiles FYR domain FYRN motif profile. 785 843 IPR003888 GO:0005634
Dere02g3233 1041 Pfam JmjC domain, hydroxylase 273 389 IPR003347 -
Dere02g3233 1041 MobiDBLite consensus disorder prediction 99 122 - -
Dere02g3233 1041 Pfam F/Y rich C-terminus 847 934 IPR003889 GO:0005634
Dere02g3233 1041 ProSiteProfiles JmjC domain profile. 240 406 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g3233 Dere-ChrDere02 40254650 40262690 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g3233 787 973 JUMONJI Transcription Factor Family AT1G30810 50.267 3.04e-51 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Dere02g3233 JmjC 1.1e-45 CL0029