Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g3229 ATGGGTGCTCCTAAGCAAAAATGGACGCAAGAAGAAGAAGCAGCATTAAAAGCTGGAGTTGTTAAGCATGGGGTTGGGAAATGGCGCACGATACTTAAGGATCCAGAGTTTAGTGGTGTCTTGTATCTGCGGTCTAATGTTGATCTCAAGGATAAATGGAGAAATCTGAGTGTGATGGCAAATGGATGGAGCTCCCGGGATAAGTCTAGATTAGCTGTTCGAAGGGTGCAACAGGTCCCAAAACAGGATGAAAATGCTGTGAGTGCCACTTCTGCTGTTCCGAGTGATGAAGAAATTATGGATGTCAAGGCTCCTCAAGTTTCTAGAGATATGCTGCAGATTCCTGGTCCTAAGCGGTCTATTGTAAGATTGGATAACCTTATAATAGAAGCAATTACTAGCTTGAAGGAGTCTGGCGGTTCCAACAAGACAAATATTGCAGCATACATAGAGGACCAATATTGGGCACCTCCAGACTTCAGAAGGTTATTGTCAGCAAAGCTGAAATCATTGACAGCAAGTGGAAAACTTATCAAGGTAAAACGCAAATATAGGATTGCACCTACCCCAGCATATTCTGACCGAAGAAGAAACTCATCCATGTTATTGTCAGATGCAAGGCAGAGATTATCTATGAAGTTTGATAAGGATGAGGCCAATGTTATTACGAAGTCTCAGATAGATTTAGAATTAGCAAAAATAAGGTCTATGACAGCCCAAGAGGCAGCTGTGGTTGCTGCTCGAGCAGTTGCAGAAGCAGAAGTTGCCATAGCAGAAGCTGAAGAAGCAGCAAGGGAGGCAGAGGCTGCTGAAGCTGATGCAGAGGCAGCACAGGCTTTTGCAGAAGCTGCATTGAAGACACTTAATGGGAGAAACACCCCAAAATTGAGGCAGTCCGTAGAGCTTATGCGAGCCTGA 918 0.4434 MGAPKQKWTQEEEAALKAGVVKHGVGKWRTILKDPEFSGVLYLRSNVDLKDKWRNLSVMANGWSSRDKSRLAVRRVQQVPKQDENAVSATSAVPSDEEIMDVKAPQVSRDMLQIPGPKRSIVRLDNLIIEAITSLKESGGSNKTNIAAYIEDQYWAPPDFRRLLSAKLKSLTASGKLIKVKRKYRIAPTPAYSDRRRNSSMLLSDARQRLSMKFDKDEANVITKSQIDLELAKIRSMTAQEAAVVAARAVAEAEVAIAEAEEAAREAEAAEADAEAAQAFAEAALKTLNGRNTPKLRQSVELMRA 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g3229 305 FunFam Telomere repeat-binding factor 1 2 58 - -
Dere02g3229 305 Pfam linker histone H1 and H5 family 125 181 IPR005818 GO:0000786|GO:0003677|GO:0006334
Dere02g3229 305 CDD H15 126 191 IPR005818 GO:0000786|GO:0003677|GO:0006334
Dere02g3229 305 Coils Coil 246 280 - -
Dere02g3229 305 Gene3D - 118 197 IPR036388 -
Dere02g3229 305 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Dere02g3229 305 SUPERFAMILY "Winged helix" DNA-binding domain 117 197 IPR036390 -
Dere02g3229 305 PANTHER SINGLE MYB HISTONE 4 1 292 IPR044597 GO:0003691
Dere02g3229 305 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 120 188 IPR005818 GO:0000786|GO:0003677|GO:0006334
Dere02g3229 305 SMART h15plus2 118 183 IPR005818 GO:0000786|GO:0003677|GO:0006334
Dere02g3229 305 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Dere02g3229 305 SMART sant 4 59 IPR001005 -
Dere02g3229 305 SUPERFAMILY Homeodomain-like 2 70 IPR009057 -
Dere02g3229 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Dere02g3229 305 Gene3D - 2 59 - -
Dere02g3229 305 CDD SANT_TRF 6 56 - -
Dere02g3229 305 FunFam Telomere repeat-binding factor 1 118 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g3229 Dere-ChrDere02 40126523 40135490 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g3229 1 296 Single Myb Histone (SMH) Gene Family AT1G49950 66.225 4.05e-105 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Dere02g3229 Linker_histone 5.7e-09 CL0123