Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g3215 ATGAGGCCTGGTCCATTATCGATTCGACCATTCCGCAAGGAAAAGGCAGGGCAAGCCGCCAAGCTCGGTGAATCAATCCCACATCTAAAACAGAGAAAACGAAATAAACCCAAACCGGTGAACACTCCAGCTCTACTGATTCGTCAAATTGTTTCTGGTTCGTTTAAACGTTTAGTCGGCTGCTGTCTTCTTCTCTGCAGCTTCTCACGCCGTCTTCTGTCTTCGACTGAACTCGTTCGTGGTCTGCCCCTGCCCAGTTCTTCTCGCGTCGTGCCTCAGCTGGTCTGCTCTCGTTCGTGCTCTGCTCTCATCCGACGTCCGGAAATCTCCTCTGGTTCTGTACCATCCCTGTCTCTTGATAAAATTCTTTTGTCATTTAAAGACATGACTAGGATATGTGTTAAGAATCTGCCAAAATATGTTGCAGAAGAACGGCTACGGGAATTCTTTTCACAGAAAGGAGAAATAACGGATGTAAAGCTTATGCGCACCAAAGATGGTAAGAGTCGGCAATTTGGTTTTATTGGGTTCCGTACAGAGGATGAAGCCAATGAAGCTATAAAATATTTCAATAGATCCTATCTTGACACCTGCAGAATCACTTGTGAGGTGGCTCGAAAAGTTGGTGATCCAAATATTCCTCGTCCATGGAGTCGATATTCATTGAAGAAAGAGGAAAAAGTGACTAAAGATGGGAAGAAAGATGCTGAAGATAAAAGTGTGGCTAAGGCAAAAGGAGGTCGGGAGAATTTGAAGGAGAGCACTAACATTGATGATCCACAGCTTCAAGAATTTCTTCAGGTCATGCAGCCTCGGGCAAAATCAAAATTATGGGCAAATGATACATTAGAAGTATTGGATAATTCTAATGTGAAGGAGGGAAAAGCAGAGGACAGAAGCAAGGATATATCAGTTCCTGTGCATGATGAGTCAGCTCAAAGCGGCTCATCAGATGATGGGTCTTCAGATAATGATGAATCCAAGAAAGCAAATGACCTTCTCCATGATGATGTCATTTCAGATACAGAATATTTCAAGAGTCGGGTGACAAAAGAGTGGTCTGATTCTGAAAGCAGTGATAACAATGAAGACGACAACAATGCTTCTGTGAGCAGTGATGATGATGACAAAGACAGTGATAGTCATGGCAATGAAGGTGAAAAAAATTTTGATAATAAATCTTCAAAGGGAATTGGAAGAAGTGGTGCTCAAAACCTTGACCTGTCAGGCCAAGAAGATATCCATGTTGAGGATGATGACCATGAAAAGGCTGAAGTTTCCAATTATTCTGGTGATAAAGTACCTGAGCGTAGCCTGGCATCATGTCTGGAAGATGAGAAAGGAGTTTCTGAGTCCTGTCGACTGTTTGTCCGTAATCTGCCATATTCAGCCACTGAGGAGGAACTGGAAGAACACTTCAGCAAGTTTGGCAGTGTCTCACAGGTTCATCTAGTTGTTGATAAAGCTACAAAACGGTCCAAAGGAATAGCTTATATTCTTTACACACTTCCAGAATTTGCAGCCAGGTACTTGATTATTAGGGCACTAGAAGACTTGGACAATTCAATCTTTCAAGGAAGATTGTTGCATGTTTTGCCTGCCATGCAAAGGCCTTCAGACAACAGGGACAGTTCTTCCATGGACCAAAGGTCAAAAACTTTAAAGCAACAGAGAGAGGAAGAGAGGAAAGCAGCTGAAGCTAGTGGAGATACCAGAGCATGGAATAGTCTGTTTATGCGCCCTGACACAGTTGTTGAAAACATTGCTCGGAAATATGGGGTAAGTAAAAGTGATTTACTTGACCGAGAAGCTGATGATCTTGCTGTGCGCATTGCTTTGGGAGAAACTCAAGTGATTGCAGAGACAAAAAAGGCCCTTACAAACGCTGGAGTGAATGTGGAGTCCTTGGAGGAATTTGCCAATGGTCAAAAAGTTGGTGTGAAAAGAAGCAACCACATACTGTTAGTGAAGAATTTACCTTATGGTTCTTCTGAAAATGAGCTGGCTAAGATGTTTGGGAAATTTGGTAGCTTGGACAAAATAATTCTCCCTCCAACAAAGACATTGGCCTTGATTGTCTACCTTGAACCAGCTGAAGCCCGAGCAGCTTTTAGAGGTTTAGCTTACAAGCGTTTCAAAGATGCTCCATTGTACTTGGAATGGGCTCCTTCCAATGTTCTTATTCAAGGTTCAACATCTAAGAATAATGAAAAGAGTGGTGCAATTGGTGAAAATGAGGCCAAACGGCTGATATTGGAGCAACATCTTGAAGGAATATCTGATGTGGACATTGATCATGACAGAGTAGAGGCACGGTCTCTGTTTGTCAAGAACCTCAACTTTAAGACATCAGATGAGAGCTTGAAGAATCATTTCAGTAAACAAATGAAAGAGGGAAGAATATTGAGTGTTAAGGTGAAGAAGCATTTGAAAAACGGTAAGCAGGTTTCTATGGGATTTGGATTCATTGAGTTTGACTCTGTGGAGACTGCTACAAATGCTTGCAGAGATTTACAGGGGACTGTTTTGGATGGCCATGCACTTATTTTACAACTCTGTCATGCCAAGAAGGATGAACAAGTACTAAAAACAGTTGAGAAGGACAAAAGTTCAACAAAATTACTTGTTAGAAATGTAGCTTTTGAGGCAACAGAGAAGGAATTGAGACAGTTGTTTAGCCCATTTGGCCAGATTAAGAGCTTAAGGTTGCCAATGAAGTTTGGCAGTCATAGAGGGTTTGCTTTTGTAGAGTATGTTACACAGCAGGAGGCACAAAATGCACTTAAAGCACTTTCAAGCACCCACCTGTATGGCAGGCATCTGGTTATAGAGAGAGCAAAGGAAGGCGAGAGTTTGGAAGAACTACGGGCTCGAACAGCTGCTCAATTTAGTGATGAGCAAAATGGATTTCAAAATCCTATCAAGTTATCCAAGAAAAGGAAGCACATGGCCATCTTGGATGAAGGAAAGATGAAGTTTGAAAGAATTGCTGATTAG 2997 0.4204 MRPGPLSIRPFRKEKAGQAAKLGESIPHLKQRKRNKPKPVNTPALLIRQIVSGSFKRLVGCCLLLCSFSRRLLSSTELVRGLPLPSSSRVVPQLVCSRSCSALIRRPEISSGSVPSLSLDKILLSFKDMTRICVKNLPKYVAEERLREFFSQKGEITDVKLMRTKDGKSRQFGFIGFRTEDEANEAIKYFNRSYLDTCRITCEVARKVGDPNIPRPWSRYSLKKEEKVTKDGKKDAEDKSVAKAKGGRENLKESTNIDDPQLQEFLQVMQPRAKSKLWANDTLEVLDNSNVKEGKAEDRSKDISVPVHDESAQSGSSDDGSSDNDESKKANDLLHDDVISDTEYFKSRVTKEWSDSESSDNNEDDNNASVSSDDDDKDSDSHGNEGEKNFDNKSSKGIGRSGAQNLDLSGQEDIHVEDDDHEKAEVSNYSGDKVPERSLASCLEDEKGVSESCRLFVRNLPYSATEEELEEHFSKFGSVSQVHLVVDKATKRSKGIAYILYTLPEFAARYLIIRALEDLDNSIFQGRLLHVLPAMQRPSDNRDSSSMDQRSKTLKQQREEERKAAEASGDTRAWNSLFMRPDTVVENIARKYGVSKSDLLDREADDLAVRIALGETQVIAETKKALTNAGVNVESLEEFANGQKVGVKRSNHILLVKNLPYGSSENELAKMFGKFGSLDKIILPPTKTLALIVYLEPAEARAAFRGLAYKRFKDAPLYLEWAPSNVLIQGSTSKNNEKSGAIGENEAKRLILEQHLEGISDVDIDHDRVEARSLFVKNLNFKTSDESLKNHFSKQMKEGRILSVKVKKHLKNGKQVSMGFGFIEFDSVETATNACRDLQGTVLDGHALILQLCHAKKDEQVLKTVEKDKSSTKLLVRNVAFEATEKELRQLFSPFGQIKSLRLPMKFGSHRGFAFVEYVTQQEAQNALKALSSTHLYGRHLVIERAKEGESLEELRARTAAQFSDEQNGFQNPIKLSKKRKHMAILDEGKMKFERIAD 998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g3215 998 MobiDBLite consensus disorder prediction 372 394 - -
Dere02g3215 998 SUPERFAMILY RNA-binding domain, RBD 127 215 IPR035979 GO:0003676
Dere02g3215 998 CDD RRM5_RBM19_like 773 853 IPR034423 -
Dere02g3215 998 SMART rrm1_1 454 532 IPR000504 GO:0003723
Dere02g3215 998 SMART rrm1_1 131 203 IPR000504 GO:0003723
Dere02g3215 998 SMART rrm1_1 873 944 IPR000504 GO:0003723
Dere02g3215 998 SMART rrm1_1 773 851 IPR000504 GO:0003723
Dere02g3215 998 SMART rrm1_1 653 720 IPR000504 GO:0003723
Dere02g3215 998 FunFam Multiple RNA-binding domain-containing protein 1 866 972 - -
Dere02g3215 998 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 652 724 IPR000504 GO:0003723
Dere02g3215 998 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 132 200 IPR000504 GO:0003723
Dere02g3215 998 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 455 529 IPR000504 GO:0003723
Dere02g3215 998 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 774 848 IPR000504 GO:0003723
Dere02g3215 998 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 654 716 IPR000504 GO:0003723
Dere02g3215 998 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 874 941 IPR000504 GO:0003723
Dere02g3215 998 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 454 555 - -
Dere02g3215 998 CDD RRM4_RBM19_RRM3_MRD1 652 723 - -
Dere02g3215 998 Gene3D - 769 862 IPR012677 -
Dere02g3215 998 FunFam Multiple RNA-binding domain-containing protein 1 643 745 - -
Dere02g3215 998 MobiDBLite consensus disorder prediction 289 409 - -
Dere02g3215 998 SMART rrm2_1 131 203 IPR003954 GO:0003676
Dere02g3215 998 SMART rrm2_1 773 851 IPR003954 GO:0003676
Dere02g3215 998 SMART rrm2_1 873 944 IPR003954 GO:0003676
Dere02g3215 998 SMART rrm2_1 454 532 IPR003954 GO:0003676
Dere02g3215 998 MobiDBLite consensus disorder prediction 289 306 - -
Dere02g3215 998 MobiDBLite consensus disorder prediction 1 38 - -
Dere02g3215 998 SUPERFAMILY RNA-binding domain, RBD 448 544 IPR035979 GO:0003676
Dere02g3215 998 MobiDBLite consensus disorder prediction 224 258 - -
Dere02g3215 998 CDD RRM6_RBM19_RRM5_MRD1 872 946 - -
Dere02g3215 998 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 772 855 IPR000504 GO:0003723
Dere02g3215 998 Gene3D - 863 972 IPR012677 -
Dere02g3215 998 Gene3D - 644 748 IPR012677 -
Dere02g3215 998 Gene3D - 421 572 IPR012677 -
Dere02g3215 998 Gene3D - 125 255 IPR012677 -
Dere02g3215 998 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 453 536 IPR000504 GO:0003723
Dere02g3215 998 SUPERFAMILY RNA-binding domain, RBD 649 736 IPR035979 GO:0003676
Dere02g3215 998 MobiDBLite consensus disorder prediction 224 255 - -
Dere02g3215 998 MobiDBLite consensus disorder prediction 321 357 - -
Dere02g3215 998 FunFam Multiple RNA-binding domain-containing protein 1 129 256 - -
Dere02g3215 998 SUPERFAMILY RNA-binding domain, RBD 868 950 IPR035979 GO:0003676
Dere02g3215 998 CDD RRM1_MRD1 130 205 - -
Dere02g3215 998 MobiDBLite consensus disorder prediction 536 568 - -
Dere02g3215 998 SUPERFAMILY RNA-binding domain, RBD 760 857 IPR035979 GO:0003676
Dere02g3215 998 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 130 207 IPR000504 GO:0003723
Dere02g3215 998 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 872 948 IPR000504 GO:0003723
Dere02g3215 998 MobiDBLite consensus disorder prediction 543 568 - -
Dere02g3215 998 FunFam Nucleotide/nucleic acid binding protein 768 863 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g3215 Dere-ChrDere02 39911926 39926112 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g3215 763 964 Eukaryotic Initiation Factors Gene Family AT1G49760 29.108 9.21e-14 73.6