Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g3213 ATGGCAGGCGCCACACAATTCATCTGTAGCTCACACGCAATCTCTTCAGAGTTTCAAGGGCTTGCGATCTTCGCTTTACAGATCAGAATGGTTCTTCAAAACGACATAGATTTGCTTAATCCTCCGGCCGAGATCGAGAAGAGGAAGCACAAACTCAAGCGTCTCGTGCAATCTCCCAATTCATTCTTCATGGACGTTAAATGTCAAGGTTGCTTCAATATAACCACTGTATTCAGTCACTCCCAAACCGTTGTAGTTTGTGGGAATTGCCAAACGGTATTATGCCAGCCTACTGGTGGCCGAGCTAGGTTAACGGAGGGCTGCTCTTTCAGAAAGAAGGGAGATTAG 348 0.4626 MAGATQFICSSHAISSEFQGLAIFALQIRMVLQNDIDLLNPPAEIEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRKKGD 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g3213 115 FunFam 40S ribosomal protein S27 30 115 - -
Dere02g3213 115 PANTHER 40S RIBOSOMAL PROTEIN S27 29 115 IPR000592 GO:0003735|GO:0005840|GO:0006412
Dere02g3213 115 Pfam Ribosomal protein S27 59 113 IPR000592 GO:0003735|GO:0005840|GO:0006412
Dere02g3213 115 Hamap 30S ribosomal protein S27e [rps27e]. 53 113 IPR000592 GO:0003735|GO:0005840|GO:0006412
Dere02g3213 115 Gene3D - 34 114 IPR023407 -
Dere02g3213 115 ProSitePatterns Ribosomal protein S27e signature. 67 99 IPR000592 GO:0003735|GO:0005840|GO:0006412
Dere02g3213 115 SUPERFAMILY Zn-binding ribosomal proteins 59 113 IPR011332 GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g3213 Dere-ChrDere02 39884179 39885919 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g3213 30 115 Cytoplasmic Ribosomal Protein Gene Family AT3G61110 94.186 9.75e-60 176