Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g3143 ATGTTATTGGTTGGTGCTTTTCCATTGGAATGGTTCATGGTCTTCTCAGCAGCTTTTGTGCATGAAGGTGGCCCTTTTTCTTTCTCCGGGAAGAGGATCAGAGTATCAGATCTTGGAGACCAAGATCTACATCCACATGCATATTCAGGACGTTTCAGTGATGCTCCCTCGTCTTTGCATCTGGATGTAGAAACGTCTTCAACTTGCAGGATTACTGGTGATATCTCCTCTGGCTCCAGTCTTGATGATAGAGTTGATTCAGATTCTGGATTGGATATGAGCTGCCAGTCAAATATCAATAGTGGTGATTCTCCTGTATGTCGTGCCGCTGGGAATATTTCATTCCAGGATCAGAGTCATCCTGGCTATATGCAGCCTGCTTTTGTGAGTGGCTGGATGTATGTCAATGAAAATGGGCAAATGTGTGGTCCCTATATTCAGGAGCAGCTATATGAAGGATTAACTACTGGTTTCTTGCCGGTCGAGCTTCCTGTGTATCCTGTGATTAATGGCACATTAATGAACCCTGTACCATTGAATTACTTCAATCAGTTTCCTGACCATGTTTCCACAGGGTTTGTATATCTGAGCATGAGTATCTCGGGCATAACCTTGCCTACAAATTGCTCCACCTCTTCTGGCAAGGATATGACAGCATATAAACAAGATGGATCCTTTGAGCATGCTGCTCCTGTAGCTGTTAACCTTGATTCACAGTCAGTTTCTCAGTCACATGTCAACTACTCCTGTAATGAGTCCTTAATATCAAACTCAAAGTTAGGTGAAGAATGCTGTTGGCTTTATGAGGATGATAGGGGAATGAAACATGGACCACATTCCATTTTGGAATTAATTTCCTGGCACCGTTATGGACATCTCCAAGATTCATCAATGATTCATCATACTGAAAATAAGTGTAGACCGTTTGTGCTTTTGTCTGCTATAAATGCATGGAAAACAGAAAAGAGTGAAAACATCTTTAGATCAGATACCAATAGTGTCAGGGCTGGTGGTGATATGGGAAGCTTCATCTATGAAATATCTGAGGACATTTCTTCTCAACTGCACTCAGGAATCATGAAAGCTGCCCGCAGAGTTGTGTTGGATGAGATTATTGGTAACGTCATTACAGAACTTGTTACGGAAAGGAAATCTCAGAGGCATAAGCATGATTCAGTTGATAAGCCTTCTAAGACTAGCTTGTTGGATAGCAAAATGACTGAGGTTGATGAGATGAGGAAAGGTACTGCTCTTACAAGTGAGCCAGCATCTTCCCAAACATTTGATGACCAGTCTTGTCATGAAATTTCCAGAGTATCTCCAACAAGCACTAAATCAGTTGGAAGCATTGAAAATTTCTGGTGGTCATATGCTGTTGTTCGTAAAGTACTTTGTGATTATTGCATGCAAGTCATGTGGAATGCAGTGGTTTATGACACTATGGCAGAGTTCTTGCGTTCCTGGAGAAAGAGAAAACTTTGGTCTATTCCTACTAAGCCTCAACCTTCGATTAATGGATGTAGAGGTTATATTGGAAAGATCAAATCTGAAGAAGCTTTGCTTCTCAGGCCAGGTTCCTCTGAATATGATGCTGATGGCTATCCTCATTCTGGAGGGATAGTACTGGAAAGAGATGATCATAGCCAATCATCCTCTATGCCTTCTGTTGTCTTCAAAGGTGGAAACTTTGCAGAAAGTGAAAGACTGTCATGCTCTGATCATAATCGTAAAGATTTCGCATACGTTCTTGAAAGTGTGGAGAATGTGCTTCATTCGTCTTCAAAGGTGTCATTAACTGAATGGGTTAAATGTTTCACTGATAAGGAAGTGAAAAAATTATTTGATTTTTGTGAAGATGACAACTTGAGCCAGGATGCTGTCAGTGACGATGGTTTTTCAGACACACTTGGTGACAAAACCTCTAAGGAGGGAATTTTATGTGACAAATTTGTGGTTCCTATAAAATCAGGAGATTTTTTTCAAGATTCAGTATCTGGAAACCATATGTCTAATTTATTCTCGAGTGCATTTCAAAAGCTGCATGCACAGGTAGGTGATGTGGTTAATGAAGAGGATATAGGTGACATACGGCCTCCTGGATGTGAAGATAATTCAAGAATTATTGTCCCACAATACAATTGTAAATATCGACCTTCAAGATTAGATGAAAGTGTTCCTCAGATAACAAAATATGTTGCAACAGCACTGTGCCGACAGAAGTTGCATGATGAAGTTCTTGAAAAGTGGAAATCGTTGTTTCTTGATGCTGCATTCAATCATCGATTAAAATCGTTATGCTCTGCAAAGAAGATCTGCCTACCTGATGGTCACAGGGATGGTAAAGCATTCAATTCGTATGAGGGACATTTGGATGATCTAACTTCTGGACTGGTAAAAATGAAGAAAACACCAAAAAATTCTTCATCAGGAGCTTCTCTGGTGATTGGGAAATATACATACTATCGCAAGAGGCTACCACAAAAAGATCTAGGTTCTTCTCAACATTTAACTGAGCTTGGCAATAAACAAGATGATAAGTTAAAGAAACATGTTTCTGGGGATTTGGATGGGTCTACAGAAGTTGAAACATCTCCTGTTAAACCTGGAAAAACTAAGCTGGTTAGTGGGAAGAAGGATAAATCTGCTAATGGCAAGCCTTTTGCTGTCATTGGTAAAAGCGACTTGCAGAGTAAGCAGTCGTCCTTGAAAAATGCTGCTAACAAAAAAGGATTGAAACTTTCACAAACAGTTCAAGATGATGTCAAGGATGTTGTAAAACGCAACAGGGAGAGGCTTTTAGCTGTCACAGAAAATAGTGTTGGCATGAAAAAAGTAGTTAATAGCAATTGTCGTGACAGTGCCAATCAAGGAAAATCCACTCGTCATTGCTCCAAAGAGCATCTTAATGAAAGCAAAAAAGTATCAAAACCAAAAAGGAAGCATCTAGTGGCTGATGTGCAATCCTCACGTCCTGCAAAGGCTCTGAAAATTGCATGTGATGGTTCTAAGGTTGGAGTTGGTGGACATAACATGGGAAAGCTGAAGTCTGCTAAATCCAAGCCATTGAATTTATGTCCTAGATCTGATGGATGCGCTAGGACTTCTATTGATGGGTGGGAATGGCATAAATGGTCTGTAAATGCCAGTCCTGCCAATAGAGCACGTGTCAGGGGGACTCTGTGTGTTCAAAAGAAGTGTATACAATCTGATAGTCATTCAACTCATTGGTCAAACAATAAGGGTCTTTCTGCAAGAACAAATAGGGTGAAATTGCGTAACCTTCTTGCTGCTGCAGAGGGTGCTGATCTTCTGAAAGCCACTCAATTGAAGGCAAGGAAAAAGCGATTACGTTTTCAAAGGAGCAAAATACATGACTGGGGTATTGTTGCCTTGGAGCCAATAGAGGCAGAGGACTTTGTGATTGAATACATTGGAGAGCTAATTCGTCCTCGGATATCTGATATACGTGAACGTCAGTATGAGAAGATGGGAATTGGAAGCAGTTACCTGTTTAGACTTGATGATGGTTATGTGGTTGATGCTACGAAGAGAGGTGGGATTGCAAGATTTATAAACCACTCTTGTGAGCCTAATTGCTATACCAAGGTCATATCTGTTGAGGGTCAAAAGAAGATTTTCATCTATGCAAAACGTCATATAGCTGCTGGTGAAGAAATTACATACAATTATAAATTCCCTTTGGAGGAGAAAAAGATTCCCTGCAACTGTGGCTCCAGAAAGTGTCGTGGATCACTGAATTAG 3762 0.4048 MLLVGAFPLEWFMVFSAAFVHEGGPFSFSGKRIRVSDLGDQDLHPHAYSGRFSDAPSSLHLDVETSSTCRITGDISSGSSLDDRVDSDSGLDMSCQSNINSGDSPVCRAAGNISFQDQSHPGYMQPAFVSGWMYVNENGQMCGPYIQEQLYEGLTTGFLPVELPVYPVINGTLMNPVPLNYFNQFPDHVSTGFVYLSMSISGITLPTNCSTSSGKDMTAYKQDGSFEHAAPVAVNLDSQSVSQSHVNYSCNESLISNSKLGEECCWLYEDDRGMKHGPHSILELISWHRYGHLQDSSMIHHTENKCRPFVLLSAINAWKTEKSENIFRSDTNSVRAGGDMGSFIYEISEDISSQLHSGIMKAARRVVLDEIIGNVITELVTERKSQRHKHDSVDKPSKTSLLDSKMTEVDEMRKGTALTSEPASSQTFDDQSCHEISRVSPTSTKSVGSIENFWWSYAVVRKVLCDYCMQVMWNAVVYDTMAEFLRSWRKRKLWSIPTKPQPSINGCRGYIGKIKSEEALLLRPGSSEYDADGYPHSGGIVLERDDHSQSSSMPSVVFKGGNFAESERLSCSDHNRKDFAYVLESVENVLHSSSKVSLTEWVKCFTDKEVKKLFDFCEDDNLSQDAVSDDGFSDTLGDKTSKEGILCDKFVVPIKSGDFFQDSVSGNHMSNLFSSAFQKLHAQVGDVVNEEDIGDIRPPGCEDNSRIIVPQYNCKYRPSRLDESVPQITKYVATALCRQKLHDEVLEKWKSLFLDAAFNHRLKSLCSAKKICLPDGHRDGKAFNSYEGHLDDLTSGLVKMKKTPKNSSSGASLVIGKYTYYRKRLPQKDLGSSQHLTELGNKQDDKLKKHVSGDLDGSTEVETSPVKPGKTKLVSGKKDKSANGKPFAVIGKSDLQSKQSSLKNAANKKGLKLSQTVQDDVKDVVKRNRERLLAVTENSVGMKKVVNSNCRDSANQGKSTRHCSKEHLNESKKVSKPKRKHLVADVQSSRPAKALKIACDGSKVGVGGHNMGKLKSAKSKPLNLCPRSDGCARTSIDGWEWHKWSVNASPANRARVRGTLCVQKKCIQSDSHSTHWSNNKGLSARTNRVKLRNLLAAAEGADLLKATQLKARKKRLRFQRSKIHDWGIVALEPIEAEDFVIEYIGELIRPRISDIRERQYEKMGIGSSYLFRLDDGYVVDATKRGGIARFINHSCEPNCYTKVISVEGQKKIFIYAKRHIAAGEEITYNYKFPLEEKKIPCNCGSRKCRGSLN 1253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g3143 1253 MobiDBLite consensus disorder prediction 383 434 - -
Dere02g3143 1253 Coils Coil 1252 1253 - -
Dere02g3143 1253 CDD SET_SETD1 1102 1249 IPR037841 GO:0042800|GO:0048188
Dere02g3143 1253 ProSiteProfiles GYF domain profile. 263 313 IPR003169 GO:0005515
Dere02g3143 1253 ProSiteProfiles Post-SET domain profile. 1237 1253 IPR003616 -
Dere02g3143 1253 MobiDBLite consensus disorder prediction 839 856 - -
Dere02g3143 1253 MobiDBLite consensus disorder prediction 831 885 - -
Dere02g3143 1253 SMART PostSET_3 1237 1253 IPR003616 -
Dere02g3143 1253 MobiDBLite consensus disorder prediction 958 973 - -
Dere02g3143 1253 ProSiteProfiles SET domain profile. 1114 1231 IPR001214 GO:0005515
Dere02g3143 1253 SMART set_7 1114 1237 IPR001214 GO:0005515
Dere02g3143 1253 Gene3D - 250 336 IPR035445 -
Dere02g3143 1253 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETD1 73 1253 IPR044570 GO:0042800|GO:0051568
Dere02g3143 1253 MobiDBLite consensus disorder prediction 950 980 - -
Dere02g3143 1253 MobiDBLite consensus disorder prediction 383 398 - -
Dere02g3143 1253 SUPERFAMILY GYF domain 261 315 IPR035445 -
Dere02g3143 1253 Pfam SET domain 1126 1230 IPR001214 GO:0005515
Dere02g3143 1253 MobiDBLite consensus disorder prediction 418 434 - -
Dere02g3143 1253 SUPERFAMILY SET domain 1110 1250 IPR046341 -
Dere02g3143 1253 Gene3D SET domain 1035 1252 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g3143 Dere-ChrDere02 37936042 37947195 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g3143 1113 1253 C2H2 Transcription Factor Family AT2G23740 36.810 1.06e-18 90.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Dere02g3143 SET 1.3e-21 No_clan