Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g3138 ATGGGGTTCATATCTGAAAAAGCTCAGTTTCTTGAGATGGTTGCACTTCTGTGTGTTTTGTTAATGGGCTACTTCGCCCATGTAGCGTTCTCTTTATCCAATGTTTCTTCCTTCACAATTGCACAAAGCAGTGAAGCAAATGCTCTGCTGAAGTGGAAAGCCAGCCTTGACAACCAAAGCCAAACCATCTTATCTTCATGGACTACTGATACTAGTTCTTGCAGTTGGCTAGGAATTACATGTGATGGGTCCAACTCCGTCTCCAATATCACATTGGATAGTCTTGGATTAAGAGGTACGTTTCACAGCCTCAATTTCTCATCTTTCCCCGATCTCCAATTCATGAATCTACACAACAATTCGCTTCATGGGACTATCCCCTACCAGATTGGTGAGCTCTCCAAACTTAGCTATATTGATGTCACTAATAATGGGTTCTCTGGCAGCATTCCACCAAGTATTGGCAATATGTCCAAACTCATGCACCTTTATTTGCATAATAACGATCTTTCTGGTGCAATTCCTATTGAGATCACACAGTTAACTAGTATTGTAAGATTGGGCATAGCTAATAACTTTTTGAATGGCCATATTCCTGAAGATATAGGAAAGTTAGCCAACCTATCATACCTGCATCTAGGAGGCAACCGCCTTTCTGGCCCTATTCCTAAACAAATTGGTTTGTTGATAAACCTCATATACTTGATACTTGGAAATAATCAGTTTACTTCCATTCCCCAAGAAATTGGAATGATGAGACAAGTTCAAGAAATTGAGTTGTCAAATAACAATTTCTCTGGTATCATCCCTGCAACTATAGGAAACTTGAGCAACTTACAGAAACTTTATCTTTATACCAATTATATCTCGGGGTCAATTCCATGGGAAGTTGGGAAACTCTATTCTCTTCGAGATTTGCAGTTGCTACATAATAATATCTCAGGGTCAATCCCACCTTCTATAGGAAACTTGGCCAATTTGAGCTCCCTCCTTCTTTATGAAAACAACCTTTCTGGATCAATTCCTTCTAGTATTGGAAACTTGACAAGACTCAATCGACTTTCATTGTTTGAAAACAAACTTAGTGGCAACCTTCCAATAGAAATGAATAACATTACAAATTTACAATCCCTGCAATTATCTGAGAACCATTTCACTGGTAAATTGCCTCATGACATTTGTCTTGGTGGGTTGCTCGCTTGGATTGCTGTAGACATGAATCATTTCACAGGGCCAATTCCTAGAAGCTTGAAGAACTGCTCTAGCCTTATCAGAGTTAGGCTAGAAAGCAACCAACTGACAGGAAATATAACTGATGCTTTTGGGGTGTATCCACATTTGGACTATATTGATTTGAGTTACAATGTATTTTATGGCCACTTCTCACCCACTTGGGGAAAGTGCCATAATCTTACCAGTCTTAAGCTCTCCAACAATAACTTATCAGGGGGCATACCACCAAAAATAAGAGAGGCAACGAAATTACAAAGACTTGATCTGTCTTCAAATCATCTAACAGGAAAGATTCCAAAGGAATTAAGCCGCTTGACATTATTGAGTGAACTCACACTTAGCAACAATCAATTTTCTAGCAACATTCCTATTGAAATAGGATCATTGAAGAACCTTCAGACATTGAGGCTTGCAGATAACGAATTAAGTGGCTCAATTCCAGATCAGCTTGGAAGGTTGCTCAAGTTATACGAATTGAACTTAAGTAGAAATCAGTTCTTAAGCCTTCCCTCTAGTTTTGGCCAATTACAACAACTTCAATTTCTCGACCTCAGTGGAAATAATTTCACTGGAATGATCCCCACAGTTCTTGGAGGCTTGCAACAATTGGAAAAGTTGAACCTATCACATAATAGTCTCTCTGGTACCATTCCTTCAATTTTTGATGACATGAAAAGCTTGATTTGGGTTGACATATCATACAATCAACTGGAGGGACCACTTCCAGATAATTTAGCCTTTCGTAGGGCTTCATTTGAGTTGTTGAAGAACAACACAGGGTTATGTGGTAATGTATCTGGCTTGCCGATATGCCCAACCATAAATTATAATCCTCGTCATCAAAAGAGCAACCATGTGGTAATTCTTGTTTCCATCACTTTGGGCAGTCTATTGGTGGTAATGTTGTTTATGGGAATTTCATATACTATTTTCCATCGTCAAGTTGTAGCTGTGAAAAAACTTCACTCTTTACCAAATGGGGAAATGACCCATCAAAAAGCTTTTACAAGTGAAATTCAAGCCTTGACAGCAATCAGACATCGCAACATCGTGAAGCTCTATGGCTTTTGTTGGCATTCAAAGTTCTCCTTTTTGGTTTACGAATTCCTCGATGGGGGCAGCTTGGATAAGATACTAAGCAATGAGACACAAGCTATTTCATTGGATTGGAATAAGAGGATAAAAATTGTTGAAGGTGTGGCAAATGCTTTGTGCCATATTCATCATGGATGCTCTCCTCCAATTGTTCACCGTGACATATCAAGCAAAAATGTTATTTTAGATTCAAGCTATGAGGCTCACATTTCTGACTTCGGAACAGCCAAGCTTTTGTATCCTGACTCAAGCAATTGGACTTCATTTGCAGGCACCTTTGGCTATGCTGCTCCAGAGCTTGCTTACACAATGGAAGTGACTGAGAAATGTGATGTTTTTAGCTTTGGAGTGTTAGCTCTGGAAATAATTATGGGAAAGCATCCCAGAGATCTCGTAATGTCCATTTTCTCGACAACATCATCTACGGCAAAACAATCGGAAGCCTATAGTTTGCTATTAAAGGATGTGTTAGACCAAAGGCTAACTTGTCCTTTAGACTCAGTGGCTGAGAAGGTGTTCTTGATTGCAAAAATAGCCTTTGCATGCTTGAATGAAAGTCCGCGTTCTCGCCCAACAATGGATCAAGTATGTAAAGAACTTGTCATGCCAAAATCACCTCTTTCAGTTCCATTCCATAGTATCAAATTAGGAGATCTCATCTGA 2991 0.3928 MGFISEKAQFLEMVALLCVLLMGYFAHVAFSLSNVSSFTIAQSSEANALLKWKASLDNQSQTILSSWTTDTSSCSWLGITCDGSNSVSNITLDSLGLRGTFHSLNFSSFPDLQFMNLHNNSLHGTIPYQIGELSKLSYIDVTNNGFSGSIPPSIGNMSKLMHLYLHNNDLSGAIPIEITQLTSIVRLGIANNFLNGHIPEDIGKLANLSYLHLGGNRLSGPIPKQIGLLINLIYLILGNNQFTSIPQEIGMMRQVQEIELSNNNFSGIIPATIGNLSNLQKLYLYTNYISGSIPWEVGKLYSLRDLQLLHNNISGSIPPSIGNLANLSSLLLYENNLSGSIPSSIGNLTRLNRLSLFENKLSGNLPIEMNNITNLQSLQLSENHFTGKLPHDICLGGLLAWIAVDMNHFTGPIPRSLKNCSSLIRVRLESNQLTGNITDAFGVYPHLDYIDLSYNVFYGHFSPTWGKCHNLTSLKLSNNNLSGGIPPKIREATKLQRLDLSSNHLTGKIPKELSRLTLLSELTLSNNQFSSNIPIEIGSLKNLQTLRLADNELSGSIPDQLGRLLKLYELNLSRNQFLSLPSSFGQLQQLQFLDLSGNNFTGMIPTVLGGLQQLEKLNLSHNSLSGTIPSIFDDMKSLIWVDISYNQLEGPLPDNLAFRRASFELLKNNTGLCGNVSGLPICPTINYNPRHQKSNHVVILVSITLGSLLVVMLFMGISYTIFHRQVVAVKKLHSLPNGEMTHQKAFTSEIQALTAIRHRNIVKLYGFCWHSKFSFLVYEFLDGGSLDKILSNETQAISLDWNKRIKIVEGVANALCHIHHGCSPPIVHRDISSKNVILDSSYEAHISDFGTAKLLYPDSSNWTSFAGTFGYAAPELAYTMEVTEKCDVFSFGVLALEIIMGKHPRDLVMSIFSTTSSTAKQSEAYSLLLKDVLDQRLTCPLDSVAEKVFLIAKIAFACLNESPRSRPTMDQVCKELVMPKSPLSVPFHSIKLGDLI 996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g3138 996 PRINTS Leucine-rich repeat signature 611 624 - -
Dere02g3138 996 PRINTS Leucine-rich repeat signature 495 508 - -
Dere02g3138 996 Gene3D Ribonuclease Inhibitor 199 292 IPR032675 -
Dere02g3138 996 FunFam Nuclear pore complex protein NUP107 42 200 - -
Dere02g3138 996 FunFam MDIS1-interacting receptor like kinase 2 isoform A 267 369 - -
Dere02g3138 996 Gene3D Ribonuclease Inhibitor 293 396 IPR032675 -
Dere02g3138 996 Gene3D Ribonuclease Inhibitor 42 198 IPR032675 -
Dere02g3138 996 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 32 141 - -
Dere02g3138 996 ProSiteProfiles Leucine-rich repeat profile. 494 517 IPR001611 GO:0005515
Dere02g3138 996 Pfam Leucine rich repeat 542 600 IPR001611 GO:0005515
Dere02g3138 996 Pfam Leucine rich repeat 231 288 IPR001611 GO:0005515
Dere02g3138 996 Pfam Leucine rich repeat 470 529 IPR001611 GO:0005515
Dere02g3138 996 ProSitePatterns Tyrosine protein kinases specific active-site signature. 826 838 IPR008266 GO:0004672|GO:0006468
Dere02g3138 996 FunFam MDIS1-interacting receptor like kinase 2 781 982 - -
Dere02g3138 996 Pfam Protein kinase domain 724 975 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere02g3138 996 Pfam Leucine rich repeat N-terminal domain 44 82 IPR013210 -
Dere02g3138 996 Gene3D Phosphorylase Kinase; domain 1 713 780 - -
Dere02g3138 996 SUPERFAMILY RNI-like 332 656 - -
Dere02g3138 996 SUPERFAMILY Protein kinase-like (PK-like) 711 976 IPR011009 -
Dere02g3138 996 ProSiteProfiles Protein kinase domain profile. 697 978 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere02g3138 996 SMART LRR_typ_2 564 586 IPR003591 -
Dere02g3138 996 SMART LRR_typ_2 205 228 IPR003591 -
Dere02g3138 996 SMART LRR_typ_2 276 300 IPR003591 -
Dere02g3138 996 SMART LRR_typ_2 229 252 IPR003591 -
Dere02g3138 996 SMART LRR_typ_2 516 540 IPR003591 -
Dere02g3138 996 SMART LRR_typ_2 587 610 IPR003591 -
Dere02g3138 996 SMART LRR_typ_2 372 396 IPR003591 -
Dere02g3138 996 SMART LRR_typ_2 611 634 IPR003591 -
Dere02g3138 996 SMART LRR_typ_2 324 348 IPR003591 -
Dere02g3138 996 SMART LRR_typ_2 157 181 IPR003591 -
Dere02g3138 996 ProSiteProfiles Leucine-rich repeat profile. 231 252 IPR001611 GO:0005515
Dere02g3138 996 Gene3D Transferase(Phosphotransferase) domain 1 781 982 - -
Dere02g3138 996 Gene3D Ribonuclease Inhibitor 397 684 IPR032675 -
Dere02g3138 996 Pfam Leucine Rich Repeat 613 632 IPR001611 GO:0005515
Dere02g3138 996 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 373 686 - -
Dere02g3138 996 SUPERFAMILY RNI-like 89 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g3138 Dere-ChrDere02 37844974 37848321 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g3138 6 874 Receptor kinase-like Gene Family AT4G08850 40.489 0.0 659
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Dere02g3138 Pkinase 3.4e-39 CL0016