Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g3136 ATGCAAGGAACGACGCCGTTTTCTTCTGTGTACGCCTTCCCTTTCGTCACCACAAGAGCATTCGAATCCAATCCAACCATTTCTTTTCCTCTGAAGCTCAGAGCATCTCTACACGACTATCCTTTCGCAAGCAAAATTGTGGTTAAAAATTTACCATATTCTACTGGTGAGACTAGTCTTGAGAAGCAATTTTCAAACTTCGGTGAGATAGCTGATGTTAAAGTGATTAAAGATGCCGCTAAAAGATGTAAAGGATATGCTTTTATTCAGTACACTCGTCAAGATGATGCCATGCTTGCACTAGAGACAATGGATCAGAAGGTATTTGATGGCCGGAAGATTTATGTAGAACTTGCAAGGCCTGGGAGGGATGCTTTTGGTGGACGCCCGAAGACCTCAGGGCCCCCAAAGAAGTGGCATTTGCCAGATCAAGAGGATGCGGTGGATTGCTGGTACTAA 459 0.4423 MQGTTPFSSVYAFPFVTTRAFESNPTISFPLKLRASLHDYPFASKIVVKNLPYSTGETSLEKQFSNFGEIADVKVIKDAAKRCKGYAFIQYTRQDDAMLALETMDQKVFDGRKIYVELARPGRDAFGGRPKTSGPPKKWHLPDQEDAVDCWY 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g3136 152 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 44 141 - -
Dere02g3136 152 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 46 114 IPR000504 GO:0003723
Dere02g3136 152 SUPERFAMILY RNA-binding domain, RBD 44 133 IPR035979 GO:0003676
Dere02g3136 152 SMART rrm1_1 45 117 IPR000504 GO:0003723
Dere02g3136 152 CDD RRM_SF 46 117 - -
Dere02g3136 152 Gene3D - 36 141 IPR012677 -
Dere02g3136 152 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 44 121 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g3136 Dere-ChrDere02 37755596 37759467 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g3136 43 131 Eukaryotic Initiation Factors Gene Family AT4G34110 34.066 6.82e-12 60.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere02g3136 02 37755596 37759467 Dere02g3136 02 37755596 37759467 ECH