Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g3121 ATGGATTTTTCATTGGGACTGGGTGCTGCTGGTGGGTCTGGTGATGAGCTGAACGCTGTCAAGTCTCAGATGGGAAAGAAGTCCATACATCGTCACACTGCCTCTCAGATTCAACAACTTGAAGCGTTTTACAAGGATTGTCAAAATCCTAATGAAAACCAACGTAATGAATTAAGCAGAGAGCTAGGGCTTGAACCCAAACAAATCAAGTTCTGGTTTCAGAATAAGAGGACTCAAACAAAGGCCCTGAATGAACGAACAGACAGCAATGCTCTTCGTGCTGAGAATGAAAGAATGCAGTACGAGAACTTCGCAATGAAAGAGGCCCTGAAGCGTGTAAACTGCCCTACCTGTGGTGGTCCTGCATTAGATCAAGAACGCGAACGAACTCTGCAAAAACTGCTTCAGGAAAATGCTCAGCTAAAAGAAAAGGCTAGTCAACTAATTACTAGTTTAAATTCCTAA 465 0.4323 MDFSLGLGAAGGSGDELNAVKSQMGKKSIHRHTASQIQQLEAFYKDCQNPNENQRNELSRELGLEPKQIKFWFQNKRTQTKALNERTDSNALRAENERMQYENFAMKEALKRVNCPTCGGPALDQERERTLQKLLQENAQLKEKASQLITSLNS 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g3121 154 ProSitePatterns 'Homeobox' domain signature. 58 81 IPR017970 GO:0000981|GO:0006355
Dere02g3121 154 PRINTS Lambda-repressor HTH signature 54 63 IPR000047 GO:0003677
Dere02g3121 154 PRINTS Lambda-repressor HTH signature 63 79 IPR000047 GO:0003677
Dere02g3121 154 FunFam Homeobox-leucine zipper protein HDG1 13 99 - -
Dere02g3121 154 Pfam Homeodomain 30 81 IPR001356 GO:0003677
Dere02g3121 154 ProSiteProfiles 'Homeobox' domain profile. 23 83 IPR001356 GO:0003677
Dere02g3121 154 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 26 148 IPR042160 -
Dere02g3121 154 SUPERFAMILY Homeodomain-like 15 83 IPR009057 -
Dere02g3121 154 Coils Coil 124 151 - -
Dere02g3121 154 SMART HOX_1 25 87 IPR001356 GO:0003677
Dere02g3121 154 CDD homeodomain 26 81 IPR001356 GO:0003677
Dere02g3121 154 Gene3D - 14 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g3121 Dere-ChrDere02 37484839 37486337 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g3121 26 150 Homeobox Transcription Factor Family AT1G73360 56.000 1.03e-43 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Dere02g3121 Homeodomain 4.7e-17 CL0123