Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g3113 ATGGCAGTACCGGTGAGGATTCATCTCATTGCAACAGTGTTGCTCGTTTGTTTCTGTTCTGTGTTAATCTTCTGTGATGGTAAGTCAGATAGTGATTCATCAATGTTGGAGTTGCTTTTGGAGGTGAAGAAGTCTTTCGTGGAAGACCCAGAAAACGTTTTGGCAGATTGGTCTGAAAACAACACAGACTACTGTAGCTGGAGAGGTGTTACATGTGGATCAAACTCCATGGATGACTCGGTTGTGATACTGGGACTTAACTTTTCTGACTCGTCACTCACTGGGTCGATCTCTCCTTCACTCGGTCTCTTCCCAAACCTGCTTCACCTCGATCTTTCTTCTAACCGCCTCGCTGGTCCCATCCCACCTACTCTCTCGAACCTCTCTTCTTTGGAATCTTTGCTTCTCTTCTCTAACCAACTCACTGGTCACATCCCCCCTGAGTTCGGCTCGCTCGCGAGTCTCCGAGTCATGCGAATAGGTGACAACCCGTTAACAGGTCCGATTCCGTCGCCTTTTGGGAATTTAGTTAGTCTCGTGACCCTTGGCCTAGCGTCTTGTAGTCTTACCGGGTCAATTCCGTCAGAACTCGGGCGACTCAGTCAGATTGAGAATCTGATTTTACAAGAGAATGAATTCACAGGTCCGATTCCTGACGAGTTGGGAAACTGTTCACAACTCACCGTTTTCACCGCTGCAAACAACAAACTAAATGGGTCTATTCCGAGTGAACTCGGCGGGCTTCAGAATCTCCAGCTCCTAAACCTTGCGAACAACAGTGTAACAGGGGAGATTCCGAGTCAACTCGGGAATCTGAGCCAACTCACTTATTTGAATTTCGTGGGAAACCAACTCGATGGTCGTATTCCTTCGTCTTTAGCTCAACTGGGTAATCTTCAAAATCTGGACTTGTCGTTCAACAAGCTTGTTGGTGGGATTCCTGAAGAACTGGGAACAATGGGTCAGCTAGAGTACATGGTTCTGTCTGGGAATCGCCTCTCTGGGGTCATACCAAGAGGCATATGTTCCAATATGACGAGTTTGGAGCATTTGATGTTGTCGGATACTGGACTTTCTGGTGAGATTCCAAGTGAATTAAGCCAATGTCAATCGTTGAAACAACTAGATTTGTCAAACAATTCGCTAAATGGATCGATACCCATTGAGCTTTATGGGTTGTTTGGCTTGACTGATTTATTGCTTCATAATAACAGCTTGATTGGTTCAATCTCTCCCATGATAGGAAATCTTAGTAACTTGCAGACACTTGCATTGTTCCACAACAGTTTACATGGTGCTCTGCCAAGAGAGATTGGGATGCTTGGAAATCTGGAAATACTGTATCTCTATGATAATCATTTATCAGGGGAGATTCCTATGGAGATTGGTAACTGTTCGAGTTTGCAAATGATTGATTTCTTCGGAAACAAGTTCAGTGGGGAAATTCCAATCACTATTGGAAGGCTTAGAGAGTTGAATTTCCTTCATCTCAGGCAGAACGAGCTTGTGGGTGAGATTCCAGCCACATTGGGTAATTGTCATAAGTTAACTATTCTTGATTTAGCAGACAATTTCCTCTCAGGTGGGATTCCTTCAACGTTTGGATTTCTGAGAGATTTGGAGCAACTCATGCTGTATAACAACTCTCTTGAAGGTAATCTCCCTCAGCAGTTGGTATATATGAAGAATTTGACGAGGGTGAATCTTTCAAAGAACAGACTGAATGGTAGTCTACCTGTATTGTGTAGCTCTCGGAATTTTCTGTCATTTGATGTCACAAACAACGCATTCGACGGCGAAATTCCGCCCCAGCTCGGAAATTCACCTTCCCTTGAGAGGCTAAGATTAGGCAACAACAATTTTTCTGGCGAAATACCGAGGACATTGGGGAAAATTCAAGAACTTTCATTGTTAGACCTGTCTGGGAATTCCCTCACTGGACCTGTACCAGCGGAGATTTCATTGTGCAAGAAGCTAGCTCATATAGATTTTAACAATAATAGGCTATCTGGGCCAATACCATCATGGCTTGGAAGCTTGCCTCAGTTAGGAGAGCTTAAGCTATCATTCAATCAGTTTTCTGGGCAGCTTCCATCGGAGCTATTCACACGTTCCAAATTGCTAGTTCTCTCCCTAAATGAGAACTATCTTAATGGAAGCATTCCTAATGATATTGGCAACCTCACATCCCTTAATGTCCTCAATGTTGAGCATAACAACTTCTCCGGACCGATCCCTCCGGCGATAGGTAAGTTAAGCAAGCTGTATGAGCTCAGAATGTCGAGAAATGGCTTTAATGGTGAAATGCCAAGTGAGCTTGGGAGGCTCCAGAATCTTCAAAGCATTTTAGACCTCAGTTTCAACAATCTCTCTGGTGAGATCCCACCTTTGCTTGGGACTCTATCAAAGTTGGAAGTGCTTGATCTTTCTCACAATCAACTCAGTGGACAAGTCCCTCCACAAGTTGGTGAAATGAGCAGCTTGGGAAAGCTTGATCTTTCTTACAATAACCTTGAAGGTGAGTTGAATGAGCAATTCTCCCATTGGCCACCTAAGGCATTTGAAGGTAATTTACATCTTTGTGGGAGCCCTCTTAAGCACTGCAATAGTGATGGCAATCACCAATTAGGCCTTAGTAAGTCATCAGTAGTGGTAATCTCAGCTCTTTCAACATTAGCAGCAATTGCACTGGTAATACTTGCAGTTAGAATTTTCATAAAAAACAAGCAAGAATTTCTCCGAAAAGGCGGCGAAGTGAGCTATGTATATTCCTCCTCCTCATCCTCACAAGCACAGCGAAGACCACTTTTCCGATTCAACCCTGCTGGGAAGCGAGAGTTGAGGTGGGAGGATATCATGGAGGCCACTGACAATCTAAGTGATGAGTTCATAATTGGTACAGGAGGTTCTGGGACAATCTACAAAGCCGAATTGCCAACAGGAGAAACCGTGGCTGTCAAGAAAATTTCAGGAAAAGATGATTTTCTAATGAACAAGAGCTTCATGAGAGAAGTTAGGACTCTTGGGAGGATCAGGCATAGACATCTGGTGAAGCTGATGGGTTATTGCAGCAACAAGAACAAAGGAGGAGGTTGGAATCTGCTGCTATATGAGTTCATGGAGAATGGGAGTGTGTGGGATTGGCTGCATGGGAAACCAGCAAAAACCAGAAGGACCCTTGATTGGGAGGCAAGGTTCAAAGTTGCAGTAGGACTAGCTAAAGGAGTGGAGTACCTGCATCATGACTGTGTGCCAAAGATCATCCACAGGGACATCAAAACCAGCAATGTGTTGCTAGATTCCAAACTGGAGGCTCACTTGGGAGATTTCGGATTGGCAAAAGCACTAAGTATTGAGAATTATGACTCTAACACTGAGTCCAATTCTTGGTTTGCTGGCTCTTATGGCTACATTGCTCCAGAGTGTGCATACTCGCTGAAGGCGACCGAAAAGAGTGATGTATACAGCATGGGAATAGTGCTCATGGAACTTGTGAGTGGGAAAATGCCGACAGATGCAGGATTTGGAGAAGAGATGGACATGGTGAGATGGGTGGAAGTGCACATTGACATGCAAGAAGGAAGTGGTGGTCGTGAGGAACTGATTGATCCTCAGCTAAGACCTCTTTTGCCAGCCCAGCAGTTTGCTGCATTCCAAGTGCTTGAGATTGCGTTGCAGTGCACCAAAACGGCACCGCAGGAGAGGCCATCGTCGCGGCAAGTGTGCGACCTTCTCCTTCATGTGTTCAATGACAGAGTGGTTGACTTTGAGAAGATGAATTTGAAGCATTAG 3792 0.447 MAVPVRIHLIATVLLVCFCSVLIFCDGKSDSDSSMLELLLEVKKSFVEDPENVLADWSENNTDYCSWRGVTCGSNSMDDSVVILGLNFSDSSLTGSISPSLGLFPNLLHLDLSSNRLAGPIPPTLSNLSSLESLLLFSNQLTGHIPPEFGSLASLRVMRIGDNPLTGPIPSPFGNLVSLVTLGLASCSLTGSIPSELGRLSQIENLILQENEFTGPIPDELGNCSQLTVFTAANNKLNGSIPSELGGLQNLQLLNLANNSVTGEIPSQLGNLSQLTYLNFVGNQLDGRIPSSLAQLGNLQNLDLSFNKLVGGIPEELGTMGQLEYMVLSGNRLSGVIPRGICSNMTSLEHLMLSDTGLSGEIPSELSQCQSLKQLDLSNNSLNGSIPIELYGLFGLTDLLLHNNSLIGSISPMIGNLSNLQTLALFHNSLHGALPREIGMLGNLEILYLYDNHLSGEIPMEIGNCSSLQMIDFFGNKFSGEIPITIGRLRELNFLHLRQNELVGEIPATLGNCHKLTILDLADNFLSGGIPSTFGFLRDLEQLMLYNNSLEGNLPQQLVYMKNLTRVNLSKNRLNGSLPVLCSSRNFLSFDVTNNAFDGEIPPQLGNSPSLERLRLGNNNFSGEIPRTLGKIQELSLLDLSGNSLTGPVPAEISLCKKLAHIDFNNNRLSGPIPSWLGSLPQLGELKLSFNQFSGQLPSELFTRSKLLVLSLNENYLNGSIPNDIGNLTSLNVLNVEHNNFSGPIPPAIGKLSKLYELRMSRNGFNGEMPSELGRLQNLQSILDLSFNNLSGEIPPLLGTLSKLEVLDLSHNQLSGQVPPQVGEMSSLGKLDLSYNNLEGELNEQFSHWPPKAFEGNLHLCGSPLKHCNSDGNHQLGLSKSSVVVISALSTLAAIALVILAVRIFIKNKQEFLRKGGEVSYVYSSSSSSQAQRRPLFRFNPAGKRELRWEDIMEATDNLSDEFIIGTGGSGTIYKAELPTGETVAVKKISGKDDFLMNKSFMREVRTLGRIRHRHLVKLMGYCSNKNKGGGWNLLLYEFMENGSVWDWLHGKPAKTRRTLDWEARFKVAVGLAKGVEYLHHDCVPKIIHRDIKTSNVLLDSKLEAHLGDFGLAKALSIENYDSNTESNSWFAGSYGYIAPECAYSLKATEKSDVYSMGIVLMELVSGKMPTDAGFGEEMDMVRWVEVHIDMQEGSGGREELIDPQLRPLLPAQQFAAFQVLEIALQCTKTAPQERPSSRQVCDLLLHVFNDRVVDFEKMNLKH 1263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g3113 1263 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 32 195 - -
Dere02g3113 1263 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 486 1245 - -
Dere02g3113 1263 Gene3D Ribonuclease Inhibitor 379 535 IPR032675 -
Dere02g3113 1263 Gene3D Ribonuclease Inhibitor 536 872 IPR032675 -
Dere02g3113 1263 Pfam Leucine rich repeat N-terminal domain 37 72 IPR013210 -
Dere02g3113 1263 FunFam Uncharacterized protein 389 482 - -
Dere02g3113 1263 ProSitePatterns Protein kinases ATP-binding region signature. 965 988 IPR017441 GO:0005524
Dere02g3113 1263 Gene3D Phosphorylase Kinase; domain 1 920 1039 - -
Dere02g3113 1263 FunFam Leucine-rich repeat receptor-like protein kinase 1040 1262 - -
Dere02g3113 1263 PRINTS Leucine-rich repeat signature 372 385 - -
Dere02g3113 1263 PRINTS Leucine-rich repeat signature 801 814 - -
Dere02g3113 1263 Gene3D Transferase(Phosphotransferase) domain 1 1040 1257 - -
Dere02g3113 1263 SUPERFAMILY Protein kinase-like (PK-like) 942 1245 IPR011009 -
Dere02g3113 1263 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 196 289 - -
Dere02g3113 1263 Gene3D Ribonuclease Inhibitor 291 374 IPR032675 -
Dere02g3113 1263 Gene3D Ribonuclease Inhibitor 36 186 IPR032675 -
Dere02g3113 1263 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 580 872 - -
Dere02g3113 1263 Pfam Leucine rich repeat 515 574 IPR001611 GO:0005515
Dere02g3113 1263 Pfam Leucine rich repeat 322 382 IPR001611 GO:0005515
Dere02g3113 1263 ProSiteProfiles Protein kinase domain profile. 959 1250 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere02g3113 1263 SMART LRR_typ_2 345 369 IPR003591 -
Dere02g3113 1263 SMART LRR_typ_2 128 152 IPR003591 -
Dere02g3113 1263 SMART LRR_typ_2 320 344 IPR003591 -
Dere02g3113 1263 SMART LRR_typ_2 825 856 IPR003591 -
Dere02g3113 1263 SMART LRR_typ_2 248 272 IPR003591 -
Dere02g3113 1263 SMART LRR_typ_2 441 465 IPR003591 -
Dere02g3113 1263 SMART LRR_typ_2 728 752 IPR003591 -
Dere02g3113 1263 SMART LRR_typ_2 104 127 IPR003591 -
Dere02g3113 1263 SMART LRR_typ_2 561 584 IPR003591 -
Dere02g3113 1263 SMART LRR_typ_2 801 823 IPR003591 -
Dere02g3113 1263 SMART LRR_typ_2 417 440 IPR003591 -
Dere02g3113 1263 SMART LRR_typ_2 489 513 IPR003591 -
Dere02g3113 1263 SMART LRR_typ_2 296 318 IPR003591 -
Dere02g3113 1263 SMART LRR_typ_2 680 704 IPR003591 -
Dere02g3113 1263 SMART LRR_typ_2 176 200 IPR003591 -
Dere02g3113 1263 SMART LRR_typ_2 370 393 IPR003591 -
Dere02g3113 1263 SUPERFAMILY L domain-like 35 386 - -
Dere02g3113 1263 Pfam Leucine Rich Repeat 106 128 IPR001611 GO:0005515
Dere02g3113 1263 Pfam Protein kinase domain 964 1242 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere02g3113 1263 Gene3D Ribonuclease Inhibitor 187 290 IPR032675 -
Dere02g3113 1263 SUPERFAMILY L domain-like 342 647 - -
Dere02g3113 1263 SMART serkin_6 959 1250 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere02g3113 1263 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 919 1039 - -
Dere02g3113 1263 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 290 388 - -
Dere02g3113 1263 SUPERFAMILY RNI-like 581 876 - -
Dere02g3113 1263 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1087 1099 IPR008271 GO:0004672|GO:0006468
Dere02g3113 1263 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 483 579 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g3113 Dere-ChrDere02 37351698 37355796 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g3113 13 705 Receptor kinase-like Gene Family AT1G17750 36.195 1.05e-101 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Dere02g3113 Pkinase 1.1e-42 CL0016